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LOC4348844 pre-mRNA-processing factor 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348844, updated on 2-Mar-2021

Summary

Gene symbol
LOC4348844
Gene description
pre-mRNA-processing factor 19-like
Locus tag
OSNPB_100466300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PRP19; PUB72; OsPUB72; OsJ_31829
Expression
Ubiquitous expression in flower buds (RPKM 75.9), leaves before flowering (RPKM 64.3) and 6 other tissues See more
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Genomic context

See LOC4348844 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17203586..17210654, complement)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348842 Neighboring gene 54S ribosomal protein L19, mitochondrial Neighboring gene uncharacterized LOC4348845 Neighboring gene 60S ribosomal protein L23

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Pathways from PubChem

General gene information

Homology

General protein information

Preferred Names
pre-mRNA-processing factor 19
Names
LOC_Os10g32880
OSJNBa0006L06.5
Plant U-box protein 72
U-box domain-containing protein 72

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    17203586..17210654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759364.2XP_015614850.1  pre-mRNA-processing factor 19

    UniProtKB/Swiss-Prot
    Q9AV81
    Conserved Domains (4) summary
    cd00200
    Location:223510
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224261
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:254
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:67131
    Prp19; Prp19/Pso4-like
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