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LOC4348988 alpha-galactosidase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348988, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4348988
Gene description
alpha-galactosidase-like
Locus tag
OSNPB_100493600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Melibiase
Expression
Ubiquitous expression in flower buds (RPKM 84.1), roots after flowering (RPKM 71.0) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18733277..18741365)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene alpha-galactosidase Neighboring gene uncharacterized LOC4348985 Neighboring gene uncharacterized LOC4348989 Neighboring gene WAT1-related protein At3g02690, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. alpha-Galactosidase from cultured rice (Oryza sativa L. var. Nipponbare) cells. Kim WD, et al. Phytochemistry, 2002 Nov. PMID 12423882
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-galactosidase
Names
Alpha-D-galactoside galactohydrolase
LOC_Os10g35110
OSJNBa0041P03
XP_015613565.1
XP_015613566.1
XP_015613567.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404044.1 → NP_001390973.1  alpha-galactosidase precursor

    Status: VALIDATED

    Source sequence(s)
    AU166732, AU181350, CB660015, CF328404, CI642452
    UniProtKB/Swiss-Prot
    F4MGX5, Q0IWR2, Q84UX2, Q9FXT4

  2. NM_001404045.1 → NP_001390974.1  alpha-galactosidase precursor

    Status: VALIDATED

    Source sequence(s)
    AU181350, CB660015, CB668423, CI642452
    UniProtKB/Swiss-Prot
    F4MGX5, Q0IWR2, Q84UX2, Q9FXT4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18733277..18741365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758079.2 → XP_015613565.1  alpha-galactosidase isoform X1

    UniProtKB/Swiss-Prot
    Q9FXT4
    Conserved Domains (1) summary
    cl38930
    Location:58 → 416
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_015758080.2 → XP_015613566.1  alpha-galactosidase isoform X1

    UniProtKB/Swiss-Prot
    Q9FXT4
    Conserved Domains (1) summary
    cl38930
    Location:58 → 416
    AmyAc_family; Alpha amylase catalytic domain family

  3. XM_015758081.2 → XP_015613567.1  alpha-galactosidase isoform X2

    UniProtKB/TrEMBL
    A0A0P0XVT5
    Conserved Domains (1) summary
    cl07893
    Location:11 → 340
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FXT4.1 GenPept UniProtKB/Swiss-Prot:Q9FXT4

Gene LinkOut

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