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LOC4349363 protein SRG1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349363, updated on 6-Apr-2023

Summary

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Gene symbol
LOC4349363
Gene description
protein SRG1
Locus tag
OSNPB_100558750
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots after flowering (RPKM 60.7), leaves after flowering (RPKM 52.6) and 3 other tissues See more
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Genomic context

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See LOC4349363 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21992106..21993045, complement)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g02330, mitochondrial-like Neighboring gene S-norcoclaurine synthase 1-like Neighboring gene polyol transporter 5-like Neighboring gene S-norcoclaurine synthase 1 Neighboring gene uncharacterized LOC107278970

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein SRG1
Names
Os10g0558700
Os10g0558750

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21992106..21993045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026020664.1 → XP_025876449.1  protein SRG1

    Conserved Domains (1) summary
    cl26046
    Location:10 → 203
    PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein
Heading Accession and Version

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