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NPIPB15 nuclear pore complex interacting protein family member B15 [ Homo sapiens (human) ]

Gene ID: 440348, updated on 11-Jun-2021

Summary

Official Symbol
NPIPB15provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member B15provided by HGNC
Primary source
HGNC:HGNC:34409
See related
Ensembl:ENSG00000196436
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIPL2; A-761H5.4
Expression
Broad expression in testis (RPKM 17.7), skin (RPKM 3.0) and 23 other tissues See more
Orthologs
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Genomic context

See NPIPB15 in Genome Data Viewer
Location:
16q23.1
Exon count:
11
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (74374986..74392115)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (74410204..74426013)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene 118 Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene Neighboring gene uncharacterized LOC105376772 Neighboring gene C-type lectin domain family 18 member B Neighboring gene uncharacterized LOC107984827

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nuclear pore complex-interacting protein family member B15
Names
nuclear pore complex interacting protein-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001306094.2NP_001293023.1  nuclear pore complex-interacting protein family member B15 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001293023.1

    Status: VALIDATED

    Source sequence(s)
    AC009053
    Consensus CDS
    CCDS76897.1
    UniProtKB/Swiss-Prot
    A6NHN6
    Conserved Domains (1) summary
    pfam06409
    Location:23299
    NPIP; Nuclear pore complex interacting protein (NPIP)
  2. NM_001385737.1NP_001372666.1  nuclear pore complex-interacting protein family member B15 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC009053
    Conserved Domains (1) summary
    pfam06409
    Location:37306
    NPIP; Nuclear pore complex interacting protein (NPIP)
  3. NM_001385738.1NP_001372667.1  nuclear pore complex-interacting protein family member B15 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC009053
    Conserved Domains (1) summary
    pfam06409
    Location:12177
    NPIP; Nuclear pore complex interacting protein (NPIP)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    74374986..74392115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011523496.2XP_011521798.1  nuclear pore complex-interacting protein family member B15 isoform X1

    See identical proteins and their annotated locations for XP_011521798.1

    Conserved Domains (1) summary
    pfam06409
    Location:39315
    NPIP; Nuclear pore complex interacting protein (NPIP)
  2. XM_017023248.1XP_016878737.1  nuclear pore complex-interacting protein family member B15 isoform X2

    UniProtKB/Swiss-Prot
    A6NHN6
    Related
    ENSP00000411140.1, ENST00000429990.1
    Conserved Domains (1) summary
    pfam06409
    Location:23299
    NPIP; Nuclear pore complex interacting protein (NPIP)
  3. XM_024450290.1XP_024306058.1  nuclear pore complex-interacting protein family member B15 isoform X3

    Conserved Domains (1) summary
    pfam06409
    Location:23160
    NPIP; Nuclear pore complex interacting protein (NPIP)
  4. XM_011523501.2XP_011521803.1  nuclear pore complex-interacting protein family member B15 isoform X4

    See identical proteins and their annotated locations for XP_011521803.1

    Conserved Domains (1) summary
    pfam06409
    Location:1116
    NPIP; Nuclear pore complex interacting protein (NPIP)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001018059.2: Suppressed sequence

    Description
    NM_001018059.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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