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FAM90A10 family with sequence similarity 90 member A10 [ Homo sapiens (human) ]

Gene ID: 441328, updated on 8-Nov-2023

Summary

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Official Symbol
FAM90A10provided by HGNC
Official Full Name
family with sequence similarity 90 member A10provided by HGNC
Primary source
HGNC:HGNC:32258
See related
Ensembl:ENSG00000285950 MIM:613047; AllianceGenome:HGNC:32258
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM90A10P
Summary
FAM90A10 belongs to subfamily II of the primate-specific FAM90A gene family, which originated from multiple duplications and rearrangements (Bosch et al., 2007 [PubMed 17684299]). For background information on the FAM90A gene family, as well as information on the evolution of FAM90A genes, see FAM90A1 (MIM 613041).[supplied by OMIM, Oct 2009]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8p23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (7768977..7771988)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11914929..11917940)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (7626499..7629510)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene family with sequence similarity 90 member A19 Neighboring gene family with sequence similarity 90 member A9 Neighboring gene proline rich 23 domain containing 2 Neighboring gene proline rich 23 domain containing 3, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Bosch N, et al. Gene, 2008 Sep 1. PMID 18602769
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Bosch N, et al. Hum Mol Genet, 2007 Nov 1. PMID 17684299

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General protein information

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Preferred Names
putative protein FAM90A10
Names
family with sequence similarity 90 member A10, pseudogene
putative protein FAM90A10P

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164447.1 → NP_001157919.1  putative protein FAM90A10

    Status: PROVISIONAL

    Source sequence(s)
    AC084121
    Consensus CDS
    CCDS94255.1
    UniProtKB/Swiss-Prot
    A6NDY2, Q658T7
    Related
    ENSP00000497650.1, ENST00000533716.2
    Conserved Domains (2) summary
    PHA03247
    Location:25 → 391
    PHA03247; large tegument protein UL36; Provisional
    pfam15288
    Location:41 → 76
    zf-CCHC_6; Zinc knuckle

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    7768977..7771988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    667287..670298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11914929..11917940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NDY2.1 GenPept UniProtKB/Swiss-Prot:A6NDY2

Gene LinkOut

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