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sfxn1 sideroflexin 1 [ Danio rerio (zebrafish) ]

Gene ID: 445143, updated on 6-May-2021

Summary

Official Symbol
sfxn1provided by ZNC
Official Full Name
sideroflexin 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-45
See related
Ensembl:ENSDARG00000019963
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:100851
Orthologs
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Genomic context

See sfxn1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (49078447..49110308, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (50090839..50122543, complement)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (51338133..51369827, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 5b Neighboring gene septin 8b Neighboring gene si:ch1073-44g3.1 Neighboring gene protein phosphatase 2 catalytic subunit alpha a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables serine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within amino acid transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in mitochondrial transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in serine import into mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003537.2NP_001003537.1  sideroflexin-1

    See identical proteins and their annotated locations for NP_001003537.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078297
    UniProtKB/TrEMBL
    Q6DC00
    Related
    ENSDARP00000003500.4, ENSDART00000023654.6
    Conserved Domains (1) summary
    pfam03820
    Location:16322
    Mtc; Tricarboxylate carrier

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    49078447..49110308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169627.4XP_005169684.1  sideroflexin-1 isoform X1

    UniProtKB/TrEMBL
    F1R5W5
    Conserved Domains (1) summary
    pfam03820
    Location:16322
    Mtc; Tricarboxylate carrier
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