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psmb8 proteasome 20S subunit beta 8 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 445258, updated on 4-Apr-2024

Summary

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Official Symbol
psmb8provided by Xenbase
Official Full Name
proteasome 20S subunit beta 8provided by Xenbase
Primary source
Xenbase:XB-GENE-479064
See related
Ensembl:ENSXETG00000016592
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lmp7; d6s216; ring10; d6s216e
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) Unplaced Scaffold NW_022279369.1 (9753..22499, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (47284874..47297625)

NW_022279369.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family B member 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus. Nonaka M, et al. Immunogenetics, 2000 Mar. PMID 10752627
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables threonine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within immune system process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasome subunit beta type-8
Names
low molecular mass protein-7 (LMP-7) homolog
proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)
proteasome subunit LMP7A
proteasome subunit beta 8
XP_012809693.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110042.2 → NP_001103512.2  proteasome subunit beta type-8

    Status: VALIDATED

    Source sequence(s)
    AAMC04000033
    UniProtKB/TrEMBL
    F7A543

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NW_022279369.1 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9753..22499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012954239.2 → XP_012809693.1  proteasome subunit beta type-8 isoform X1

    Related
    ENSXETP00000036180.2, ENSXETT00000036180.4
    Conserved Domains (1) summary
    cd03761
    Location:67 → 254
    proteasome_beta_type_5; proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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