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tmem167b transmembrane protein 167B [ Danio rerio (zebrafish) ]

Gene ID: 445304, updated on 27-Mar-2024

Summary

Official Symbol
tmem167bprovided by ZNC
Official Full Name
transmembrane protein 167Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040808-17
See related
Ensembl:ENSDARG00000059400 AllianceGenome:ZFIN:ZDB-GENE-040808-17
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6906967; zgc:101127
Summary
Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167B (transmembrane protein 167B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See tmem167b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (2699964..2707033)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (2630610..2637679)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene si:ch211-160o17.6 Neighboring gene UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 Neighboring gene mitogen-activated protein kinase 14b Neighboring gene SRSF protein kinase 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003761.2NP_001003761.1  protein kish-B precursor

    See identical proteins and their annotated locations for NP_001003761.1

    Status: VALIDATED

    Source sequence(s)
    CR318593, EB840577
    UniProtKB/Swiss-Prot
    Q6AZW1
    Related
    ENSDARP00000076947.3, ENSDART00000082512.5
    Conserved Domains (1) summary
    pfam06842
    Location:1146
    DUF1242; Protein of unknown function (DUF1242)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    2699964..2707033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)