U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PRDM1 PR/SET domain 1 [ Gallus gallus (chicken) ]

Gene ID: 445340, updated on 3-Apr-2024

Summary

Symbol
PRDM1provided by CGNC
Full Name
PR/SET domain 1provided by CGNC
Primary source
CGNC:11462
See related
Ensembl:ENSGALG00010013292
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
Blimp-1
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (68037906..68135680, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (67819602..67917287, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene autophagy related 5 Neighboring gene uncharacterized LOC121110217 Neighboring gene uncharacterized LOC101751005 Neighboring gene prolyl endopeptidase

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
PR domain zinc finger protein 1
Names
B-lymphocyte-induced maturation protein 1
PR domain 1
PR domain containing 1, with ZNF domain

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    68037906..68135680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697684.2XP_040553618.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Related
    ENSGALP00010018768.1, ENSGALT00010031978.1
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  2. XM_046939151.1XP_046795107.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
    Related
    ENSGALP00010018771.1, ENSGALT00010031981.1
  3. XM_015284537.4XP_015140023.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  4. XM_004940355.5XP_004940412.1  PR domain zinc finger protein 1 isoform X3

    See identical proteins and their annotated locations for XP_004940412.1

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  5. XM_046939152.1XP_046795108.1  PR domain zinc finger protein 1 isoform X6

  6. XM_025149057.3XP_025004825.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  7. XM_025149056.3XP_025004824.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIV9, A0A8V0YJN2, A0A8V0YRH7
    Related
    ENSGALP00010018766.1, ENSGALT00010031976.1
    Conserved Domains (4) summary
    COG5048
    Location:406675
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:564584
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:68195
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:604629
    zf-H2C2_2; Zinc-finger double domain
  8. XM_046939154.1XP_046795110.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
  9. XM_004940353.5XP_004940410.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YRH7
    Related
    ENSGALP00010018761.1, ENSGALT00010031970.1
    Conserved Domains (4) summary
    COG5048
    Location:407676
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:565585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:69196
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:605630
    zf-H2C2_2; Zinc-finger double domain
  10. XM_040697685.2XP_040553619.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  11. XM_003641038.6XP_003641086.2  PR domain zinc finger protein 1 isoform X3

    See identical proteins and their annotated locations for XP_003641086.2

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Related
    ENSGALP00010018763.1, ENSGALT00010031972.1
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  12. XM_025149060.3XP_025004828.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Related
    ENSGALP00010018754.1, ENSGALT00010031963.1
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  13. XM_046939153.1XP_046795109.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
  14. XM_025149059.3XP_025004827.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  15. XM_040697686.2XP_040553620.1  PR domain zinc finger protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YRG3
    Conserved Domains (3) summary
    COG5048
    Location:261530
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419439
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:150
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
  16. XM_046939155.1XP_046795111.1  PR domain zinc finger protein 1 isoform X5

  17. XM_015284539.4XP_015140025.1  PR domain zinc finger protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YRG3
    Conserved Domains (4) summary
    COG5048
    Location:285554
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:443463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:374
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    pfam13465
    Location:483508
    zf-H2C2_2; Zinc-finger double domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    67819602..67917287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040666813.2XP_040522747.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  2. XM_046914486.1XP_046770442.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
  3. XM_040666816.2XP_040522750.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  4. XM_040666817.2XP_040522751.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  5. XM_040666814.2XP_040522748.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  6. XM_040666812.2XP_040522746.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIV9, A0A8V0YJN2, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:406675
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:564584
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:68195
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:604629
    zf-H2C2_2; Zinc-finger double domain
  7. XM_046914488.1XP_046770444.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
  8. XM_040666811.2XP_040522745.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:407676
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:565585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:69196
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:605630
    zf-H2C2_2; Zinc-finger double domain
  9. XM_040666819.2XP_040522753.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  10. XM_040666822.2XP_040522756.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  11. XM_040666820.2XP_040522754.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  12. XM_046914487.1XP_046770443.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4
  13. XM_040666818.2XP_040522752.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2UNE4, A0A8V0YIV9, A0A8V0YRH7
    Conserved Domains (4) summary
    COG5048
    Location:383652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19187
    Location:45172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  14. XM_040666824.2XP_040522758.1  PR domain zinc finger protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YRG3
    Conserved Domains (3) summary
    COG5048
    Location:261530
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419439
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:150
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
  15. XM_046914490.1XP_046770446.1  PR domain zinc finger protein 1 isoform X5

  16. XM_040666823.2XP_040522757.1  PR domain zinc finger protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YRG3
    Conserved Domains (4) summary
    COG5048
    Location:285554
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:443463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl40432
    Location:374
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    pfam13465
    Location:483508
    zf-H2C2_2; Zinc-finger double domain