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pgls 6-phosphogluconolactonase [ Danio rerio (zebrafish) ]

Gene ID: 445494, updated on 6-May-2021

Summary

Official Symbol
pglsprovided by ZNC
Official Full Name
6-phosphogluconolactonaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040822-9
See related
Ensembl:ENSDARG00000021233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb11g07; wu:fb11g07; zgc:100853
Orthologs
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Genomic context

See pgls in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (52684556..52700610)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (52429893..52445947)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (53266173..53338632)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zgc:113210 Neighboring gene zinc finger protein 84 Neighboring gene collagen beta(1-O)galactosyltransferase 1a Neighboring gene GEM interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 6-phosphogluconolactonase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables 6-phosphogluconolactonase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 
involved_in pentose-phosphate shunt, oxidative branch IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
6-phosphogluconolactonase
NP_001004117.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004117.3NP_001004117.2  6-phosphogluconolactonase

    Status: VALIDATED

    Source sequence(s)
    AL840631
    UniProtKB/TrEMBL
    F1R0C0
    Related
    ENSDARP00000113038.1, ENSDART00000139037.2
    Conserved Domains (1) summary
    cd01400
    Location:14233
    6PGL; 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    52684556..52700610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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