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ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 445537, updated on 6-May-2021

Summary

Official Symbol
ST3GAL1provided by VGNC
Official Full Name
ST3 beta-galactoside alpha-2,3-sialyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:98863
See related
Ensembl:ENSSSCG00000005943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SIAT4A
Expression
Ubiquitous expression in liver (RPKM 28.6), kidney (RPKM 21.8) and 8 other tissues See more
Orthologs
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Genomic context

See ST3GAL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (7814492..7911053)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (7685469..7776994)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102159040 Neighboring gene uncharacterized LOC110260216 Neighboring gene uncharacterized LOC110260217 Neighboring gene N-myc downstream regulated 1 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene cellular communication network factor 4

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Homology

Gene Ontology Provided by GO

Process Evidence Code Pubs
involved_in N-acetylneuraminate metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in protein N-linked glycosylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in sialylation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi medial cisterna membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in Golgi trans cisterna membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in trans-Golgi network membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
Names
SIAT4-A
ST3Gal I
ST3GalA.1
ST3GalI
ST3O
alpha 2,3-ST 1
beta-galactoside alpha-2,3-sialyltransferase 1
gal beta-1,3 GalNAc alpha-2,3 sialyltransferase
gal-NAc6S
monosialoganglioside sialyltransferase
sialyltransferase 4A
NP_001004047.1
XP_005662893.1
XP_005662894.1
XP_005662895.1
XP_013851917.1
XP_020944400.1
XP_020944401.1
XP_020944402.1
XP_020944403.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004047.1NP_001004047.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1

    See identical proteins and their annotated locations for NP_001004047.1

    Status: PROVISIONAL

    Source sequence(s)
    M97753
    UniProtKB/Swiss-Prot
    Q02745
    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    7814492..7911053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005662836.3XP_005662893.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005662893.1

    UniProtKB/TrEMBL
    K7GPR8
    Related
    ENSSSCP00000006354.4, ENSSSCT00000006526.4
    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  2. XM_013996463.2XP_013851917.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    K7GPR8
    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  3. XM_021088743.1XP_020944402.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  4. XM_021088742.1XP_020944401.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  5. XM_005662838.3XP_005662895.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005662895.1

    UniProtKB/TrEMBL
    K7GPR8
    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  6. XM_021088744.1XP_020944403.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  7. XM_021088741.1XP_020944400.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
  8. XM_005662837.3XP_005662894.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005662894.1

    UniProtKB/TrEMBL
    K7GPR8
    Conserved Domains (1) summary
    pfam00777
    Location:86341
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
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