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hox10 hox10 protein [ Ciona intestinalis (vase tunicate) ]

Gene ID: 445719, updated on 21-Dec-2023

Summary

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Gene symbol
hox10
Gene description
hox10 protein
See related
Ensembl:ENSCING00000001031
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Hoxc10; Ci-Hox10
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Genomic context

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See hox10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190374.1 (98496..102901, complement)

NW_004190374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108950204 Neighboring gene glutamic acid-rich protein Neighboring gene matrilin-2 Neighboring gene fibrillin-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004190374 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hox10-regulated endodermal cell migration is essential for development of the ascidian intestine. Kawai N, et al. Dev Biol, 2015 Jul 1. PMID 25888074
  2. Unusual number and genomic organization of Hox genes in the tunicate Ciona intestinalis. Spagnuolo A, et al. Gene, 2003 May 8. PMID 12758123
  3. Anterior migration of lateral plate mesodermal cells during embryogenesis of the pufferfish Takifugu niphobles: insight into the rostral positioning of pelvic fins. Tanaka M, et al. J Anat, 2015 Jul. PMID 26018586, Free PMC Article
  4. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
  5. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hox10 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032524.1 → NP_001027696.1  hox10 protein

    See identical proteins and their annotated locations for NP_001027696.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ535675
    UniProtKB/TrEMBL
    A0A1W2VN80, Q4H3D1, Q8I7C8
    Related
    ENSCINP00000001927, ENSCINT00000001927
    Conserved Domains (1) summary
    pfam00046
    Location:257 → 310
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190374.1 Reference KH Primary Assembly

    Range
    98496..102901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026838062.1 → XP_026693863.1  hox10 protein isoform X1

    UniProtKB/TrEMBL
    F6VEV6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.