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prpf19 pre-mRNA processing factor 19 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448017, updated on 30-Sep-2021

Summary

Official Symbol
prpf19provided by Xenbase
Official Full Name
pre-mRNA processing factor 19provided by Xenbase
Primary source
Xenbase:XB-GENE-975233
See related
EnsemblRapid:ENSXETG00000011938
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
prp19
Orthologs
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Genomic context

See prpf19 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (60604815..60629315, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (35810450..35850601)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene uncharacterized LOC116412422 Neighboring gene syntaxin 3 Neighboring gene uncharacterized LOC116412476 Neighboring gene transmembrane protein 132A

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC69283

General protein information

Preferred Names
pre-mRNA-processing factor 19
Names
PRP19/PSO4 homolog
PRP19/PSO4 pre-mRNA processing factor 19 homolog
NP_001005435.1
XP_031760828.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005435.1NP_001005435.1  pre-mRNA-processing factor 19

    See identical proteins and their annotated locations for NP_001005435.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074533
    UniProtKB/TrEMBL
    Q6GLG2
    Related
    ENSXETP00000026115.3, ENSXETT00000026115.5
    Conserved Domains (4) summary
    cd00200
    Location:217431
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:556
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    60604815..60629315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904968.1XP_031760828.1  pre-mRNA-processing factor 19 isoform X1

    Related
    ENSXETP00000074704.2, ENSXETT00000085546.2
    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:556
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
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