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pomt1 protein-O-mannosyltransferase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448433, updated on 30-Sep-2021

Summary

Official Symbol
pomt1provided by Xenbase
Official Full Name
protein-O-mannosyltransferase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-944435
See related
EnsemblRapid:ENSXETG00000001481
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See pomt1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (12250867..12258583, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (6329416..6337899)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene proline rich transmembrane protein 1B Neighboring gene uridine-cytidine kinase 1 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene proline-rich coiled-coil 2B

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC89443

General protein information

Preferred Names
protein O-mannosyl-transferase 1
NP_001006756.1
XP_012823681.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006755.2NP_001006756.1  protein O-mannosyl-transferase 1

    See identical proteins and their annotated locations for NP_001006756.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075534
    UniProtKB/TrEMBL
    Q6DIK4
    Conserved Domains (1) summary
    COG1928
    Location:19720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    12250867..12258583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968227.3XP_012823681.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_012823681.1

    UniProtKB/TrEMBL
    Q6DIK4
    Related
    ENSXETP00000097097.2, ENSXETT00000101888.2
    Conserved Domains (1) summary
    COG1928
    Location:19720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

RNA

  1. XR_004219467.1 RNA Sequence

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