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saa serum amyloid A [ Danio rerio (zebrafish) ]

Gene ID: 449557, updated on 5-Jan-2022

Summary

Official Symbol
saaprovided by ZNC
Official Full Name
serum amyloid Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040927-15
See related
Ensembl:ENSDARG00000045999
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103580
Summary
Acts upstream of with a positive effect on neutrophil chemotaxis. Acts upstream of with a negative effect on neutrophil-mediated killing of bacterium. Acts upstream of or within with a positive effect on cell maturation. Acts upstream of or within neutrophil migration and response to bacterium. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in liver. Orthologous to several human genes including SAA2 (serum amyloid A2). [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See saa in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (12950507..12956434)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (12688552..12703718)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (13776639..13782566)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene SH3-domain GRB2-like 3a Neighboring gene ferritin, heavy polypeptide 1a Neighboring gene ribosomal protein, large P2, like Neighboring gene solute carrier family 25 member 22b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005599.2NP_001005599.1  serum amyloid A precursor

    See identical proteins and their annotated locations for NP_001005599.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081487
    UniProtKB/TrEMBL
    Q642J9
    Related
    ENSDARP00000067628.3, ENSDART00000067629.5
    Conserved Domains (1) summary
    pfam00277
    Location:22121
    SAA; Serum amyloid A protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    12950507..12956434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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