PDE4B phosphodiesterase 4B [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: PDE4Bprovided by VGNC
Official Full Name: phosphodiesterase 4Bprovided by VGNC
Primary source: VGNC:VGNC:8089
Locus tag: CK820_G0010372
See related: Ensembl:ENSPTRG00000000831
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	1	NC_072398.2 (164618984..165300537, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	1	NC_072398.1 (66098581..66680307)

Chromosome 1 - NC_072398.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

SHGC-105808 (e-PCR)
- UniSTS:169474

SHGC-84244 (e-PCR)
- UniSTS:104718

SHGC-80038 (e-PCR)
- UniSTS:101648

AL009956 (e-PCR)
- UniSTS:56091

D1S289E (e-PCR)
- UniSTS:147501

SHGC-149105 (e-PCR)
- UniSTS:173105

SHGC-82313 (e-PCR)
- UniSTS:104250

PDE4B_372 (e-PCR)
- UniSTS:277574

AL034198 (e-PCR)
- UniSTS:94024

G34878 (e-PCR)
- UniSTS:38476

RH64524 (e-PCR)
- UniSTS:59487

D1S2393 (e-PCR)
- UniSTS:66663

SHGC-106013 (e-PCR)
- UniSTS:169586

AL009941 (e-PCR)
- UniSTS:63606

G69473 (e-PCR)
- UniSTS:229520

SGC30670 (e-PCR)
- UniSTS:79282

D1S520 (e-PCR)
- UniSTS:30649

SHGC-74957 (e-PCR)
- UniSTS:36561

G34880 (e-PCR)
- UniSTS:65235

AL010057 (e-PCR)
- UniSTS:3028

G16246 (e-PCR)
- UniSTS:60124

G16244 (e-PCR)
- UniSTS:38623

SGC32588 (e-PCR)
- UniSTS:16122

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables 3',5'-cyclic-AMP phosphodiesterase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables transmembrane transporter binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in signal transduction	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cAMP-specific 3',5'-cyclic phosphodiesterase 4B; 3',5'-cyclic-AMP phosphodiesterase 4B

Names: phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)

XP_001162426.3

EC 3.1.4.17

XP_001162471.3

EC 3.1.4.17

XP_003949484.3

EC 3.1.4.17

XP_009458264.2

EC 3.1.4.17

XP_063657002.1

EC 3.1.4.17

XP_063657004.1

EC 3.1.4.17

XP_063657013.1

EC 3.1.4.17

XP_063657014.1

EC 3.1.4.17

XP_063657015.1

EC 3.1.4.17

XP_063657016.1

EC 3.1.4.17

XP_063657017.1

EC 3.1.4.17

XP_063657018.1

EC 3.1.4.17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

164618984..165300537 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063800934.1 → XP_063657004.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X1
XM_001162471.7 → XP_001162471.3 3',5'-cyclic-AMP phosphodiesterase 4B isoform X1
XM_001162426.7 → XP_001162426.3 3',5'-cyclic-AMP phosphodiesterase 4B isoform X1
XM_063800945.1 → XP_063657015.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X5
XM_063800932.1 → XP_063657002.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X1
XM_063800946.1 → XP_063657016.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X5
XM_003949435.6 → XP_003949484.3 3',5'-cyclic-AMP phosphodiesterase 4B isoform X2
XM_063800943.1 → XP_063657013.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X3
XM_063800948.1 → XP_063657018.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X6
XM_063800944.1 → XP_063657014.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X4
XM_063800947.1 → XP_063657017.1 3',5'-cyclic-AMP phosphodiesterase 4B isoform X6
XM_009459989.5 → XP_009458264.2 3',5'-cyclic-AMP phosphodiesterase 4B isoform X7