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POU2F1 POU class 2 homeobox 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 457486, updated on 29-Mar-2024

Summary

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Official Symbol
POU2F1provided by VGNC
Official Full Name
POU class 2 homeobox 1provided by VGNC
Primary source
VGNC:VGNC:11782
Locus tag
CK820_G0027804
See related
Ensembl:ENSPTRG00000048706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (81682300..81888690, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (149461114..149667431)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1 member D1-like Neighboring gene uncharacterized LOC104003561 Neighboring gene CD247 molecule Neighboring gene small ribosomal subunit protein eS17-like Neighboring gene serine/threonine/tyrosine interacting like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 2, transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279883.2 → NP_001266812.1  POU domain, class 2, transcription factor 1

    See identical proteins and their annotated locations for NP_001266812.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306827
    UniProtKB/TrEMBL
    A0A2I3SJH1, A0A2J8LLX9, A0A2J8LLY6, A0A6D2YAD7, A0A803KH46, G2HJB3
    Related
    ENSPTRP00000083114.1, ENSPTRT00000081391.1
    Conserved Domains (2) summary
    smart00352
    Location:280 → 354
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:382 → 435
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    81682300..81888690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016961676.4 → XP_016817165.1  POU domain, class 2, transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SJH1, A0A2J8LLX9, A0A2J8LLY6, A0A6D2YAD7, A0A803KH46, G2HJB3
    Conserved Domains (2) summary
    smart00352
    Location:280 → 354
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:382 → 435
    Homeobox; Homeobox domain

  2. XM_063787103.1 → XP_063643173.1  POU domain, class 2, transcription factor 1 isoform X3

  3. XM_063787136.1 → XP_063643206.1  POU domain, class 2, transcription factor 1 isoform X3

  4. XM_016961632.4 → XP_016817121.1  POU domain, class 2, transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SJH1, A0A2I3TFN3, A0A2J8LLX7, A0A2J8LLY6, A0A6D2WX21, A0A6D2YAD7
    Related
    ENSPTRP00000088049.1
    Conserved Domains (2) summary
    smart00352
    Location:292 → 366
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:394 → 447
    Homeobox; Homeobox domain

  5. XM_016961732.2 → XP_016817221.1  POU domain, class 2, transcription factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SJH1, A0A2J8LLY6, A0A6D2YAD7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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