TTC28 tetratricopeptide repeat domain 28 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: TTC28provided by VGNC
Official Full Name: tetratricopeptide repeat domain 28provided by VGNC
Primary source: VGNC:VGNC:5989
Locus tag: CK820_G0024438
See related: Ensembl:ENSPTRG00000014203
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	23	NC_086016.1 (30133614..30834231, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	22	NC_072420.1 (23167688..23866599, complement)

Chromosome 23 - NC_086016.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D22S570 (e-PCR)
- UniSTS:7950

RH44930 (e-PCR)
- UniSTS:50705

D22S298 (e-PCR)
- UniSTS:68135

WI-13513 (e-PCR)
- UniSTS:14401

RH69365 (e-PCR)
- UniSTS:54853

D22S576 (e-PCR)
- UniSTS:60743

D22S567 (e-PCR)
- UniSTS:41303

G65734 (e-PCR)
- UniSTS:167001

SHGC-58212 (e-PCR)
- UniSTS:24671

D22S693 (e-PCR)
- UniSTS:22368

D22S566 (e-PCR)
- UniSTS:65635

REN69028 (e-PCR)
- UniSTS:393828

SHGC-56533 (e-PCR)
- UniSTS:63357

G65443 (e-PCR)
- UniSTS:166535

G65444 (e-PCR)
- UniSTS:166536

G63570 (e-PCR)
- UniSTS:140681

G65445 (e-PCR)
- UniSTS:166537

G65446 (e-PCR)
- UniSTS:166538

G65447 (e-PCR)
- UniSTS:166539

G65449 (e-PCR)
- UniSTS:166541

D22S29 (e-PCR)
- UniSTS:69530

D22S986E (e-PCR)
- UniSTS:48289

D22S594 (e-PCR)
- UniSTS:62881

RH120694 (e-PCR)
- UniSTS:132775

RH1698 (e-PCR)
- UniSTS:88495

AL031086 (e-PCR)
- UniSTS:24752

SHGC-32911 (e-PCR)
- UniSTS:16316

G18168 (e-PCR)
- UniSTS:2752

stbK732E4.0.179 (e-PCR)
- UniSTS:181697

stbK754D9T7 (e-PCR)
- UniSTS:181698

SHGC-7715 (e-PCR)
- UniSTS:71110

RH47125 (e-PCR)
- UniSTS:52187

D22S1262 (e-PCR)
- UniSTS:44774

D22S571 (e-PCR)
- UniSTS:56819

RH120772 (e-PCR)
- UniSTS:132852

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tetratricopeptide repeat protein 28

XP_001172489.1

EC 2.7.11.1

XP_009436347.1

EC 2.7.11.1

XP_009436348.1

EC 2.7.11.1

XP_016794368.1

EC 2.7.11.1

XP_016794369.1

EC 2.7.11.1

XP_054531626.1

EC 2.7.11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

30133614..30834231 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009438072.5 → XP_009436347.1 tetratricopeptide repeat protein 28 isoform X2

UniProtKB/TrEMBL

A0A2J8QNA3

Conserved Domains (7) summary

smart00028
Location:394 → 426

TPR; Tetratricopeptide repeats

COG0457
Location:694 → 995

TPR; Tetratricopeptide (TPR) repeat [General function prediction only]

sd00006
Location:91 → 121

TPR; TPR repeat [structural motif]

pfam12770
Location:1390 → 1713

CHAT; CHAT domain

pfam13176
Location:959 → 994

TPR_7; Tetratricopeptide repeat

pfam13414
Location:94 → 157

TPR_11; TPR repeat

pfam13424
Location:315 → 386

TPR_12; Tetratricopeptide repeat
XM_001172489.6 → XP_001172489.1 tetratricopeptide repeat protein 28 isoform X1

See identical proteins and their annotated locations for XP_001172489.1

UniProtKB/TrEMBL

A0A2J8QN79, A0A2J8QNA3, A0A6D2WWP3, H2RDV0, K6ZL88

Related

ENSPTRP00000059381.2

Conserved Domains (5) summary

sd00006
Location:91 → 121

TPR; TPR repeat [structural motif]

pfam12770
Location:1390 → 1713

CHAT; CHAT domain

pfam13424
Location:957 → 1029

TPR_12; Tetratricopeptide repeat

cl25496
Location:2088 → 2336

Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

cl26002
Location:47 → 937

TPR_11; TPR repeat
XM_054675651.2 → XP_054531626.1 tetratricopeptide repeat protein 28 isoform X6
XM_009438073.5 → XP_009436348.1 tetratricopeptide repeat protein 28 isoform X4

UniProtKB/TrEMBL

A0A2J8QNA3

Conserved Domains (7) summary

smart00028
Location:276 → 308

TPR; Tetratricopeptide repeats

COG0457
Location:576 → 877

TPR; Tetratricopeptide (TPR) repeat [General function prediction only]

sd00006
Location:476 → 504

TPR; TPR repeat [structural motif]

pfam12770
Location:1272 → 1595

CHAT; CHAT domain

pfam13176
Location:841 → 876

TPR_7; Tetratricopeptide repeat

pfam13414
Location:157 → 227

TPR_11; TPR repeat

pfam13424
Location:197 → 268

TPR_12; Tetratricopeptide repeat
XM_016938879.4 → XP_016794368.1 tetratricopeptide repeat protein 28 isoform X3

UniProtKB/TrEMBL

A0A2J8QNA3
XM_016938880.4 → XP_016794369.1 tetratricopeptide repeat protein 28 isoform X5

UniProtKB/TrEMBL

A0A2J8QNA3

Related

ENSPTRP00000079244.1