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RUFY3 RUN and FYVE domain containing 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461275, updated on 24-Apr-2021

Summary

Official Symbol
RUFY3provided by VGNC
Official Full Name
RUN and FYVE domain containing 3provided by VGNC
Primary source
VGNC:VGNC:12969
Locus tag
CK820_G0003443
See related
Ensembl:ENSPTRG00000016135
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See RUFY3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 4 NC_036883.1 (58434023..58537953, complement)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 4 NC_006471.4 (59805768..59909657, complement)

Chromosome 4 - NC_036883.1Genomic Context describing neighboring genes Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene joining chain of multimeric IgA and IgM

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
protein RUFY3
Names
rap2 interacting protein x

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036883.1 Reference Clint_PTRv2 Primary Assembly

    Range
    58434023..58537953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009447769.3XP_009446044.1  protein RUFY3 isoform X3

    Conserved Domains (5) summary
    cd15744
    Location:589635
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam01442
    Location:332505
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:161284
    RUN; RUN domain
    pfam05038
    Location:2164
    Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
    pfam15960
    Location:400556
    DUF4763; Domain of unknown function (DUF4763)
  2. XM_009447768.3XP_009446043.1  protein RUFY3 isoform X2

    Conserved Domains (5) summary
    cd15744
    Location:609643
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam01442
    Location:332505
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:161284
    RUN; RUN domain
    pfam05038
    Location:2164
    Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
    pfam15960
    Location:400556
    DUF4763; Domain of unknown function (DUF4763)
  3. XM_009447767.3XP_009446042.1  protein RUFY3 isoform X1

    Conserved Domains (5) summary
    cd15744
    Location:620666
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam01442
    Location:332505
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:161284
    RUN; RUN domain
    pfam05038
    Location:2164
    Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
    pfam15960
    Location:400556
    DUF4763; Domain of unknown function (DUF4763)
  4. XM_001160004.4XP_001160004.1  protein RUFY3 isoform X5

    See identical proteins and their annotated locations for XP_001160004.1

    UniProtKB/TrEMBL
    H2RA52
    Related
    ENSPTRP00000053507.1
    Conserved Domains (3) summary
    cd15744
    Location:562608
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:103224
    RUN; RUN domain
    cl25732
    Location:254538
    SMC_N; RecF/RecN/SMC N terminal domain
  5. XM_009447774.3XP_009446049.1  protein RUFY3 isoform X8

    Conserved Domains (3) summary
    COG1196
    Location:192432
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:498544
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:39160
    RUN; RUN domain
  6. XM_016951611.2XP_016807100.1  protein RUFY3 isoform X7

    Conserved Domains (3) summary
    cd15744
    Location:509555
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:50171
    RUN; RUN domain
    cl25732
    Location:201485
    SMC_N; RecF/RecN/SMC N terminal domain
  7. XM_009447770.2XP_009446045.1  protein RUFY3 isoform X4

    See identical proteins and their annotated locations for XP_009446045.1

    Related
    ENSPTRP00000092298.1, ENSPTRT00000097672.1
    Conserved Domains (2) summary
    cd15744
    Location:580626
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:121244
    RUN; RUN domain
  8. XM_009447771.3XP_009446046.1  protein RUFY3 isoform X6

    Conserved Domains (4) summary
    pfam01442
    Location:332505
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:161284
    RUN; RUN domain
    pfam05038
    Location:2164
    Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
    pfam15960
    Location:400556
    DUF4763; Domain of unknown function (DUF4763)
  9. XM_009447775.3XP_009446050.1  protein RUFY3 isoform X9

    Related
    ENSPTRP00000084122.1
    Conserved Domains (4) summary
    pfam01442
    Location:332504
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam02759
    Location:161284
    RUN; RUN domain
    pfam05038
    Location:2164
    Cytochrom_B558a; Cytochrome Cytochrome b558 alpha-subunit
    pfam16043
    Location:325466
    DUF4795; Domain of unknown function (DUF4795)
  10. XM_024356134.1XP_024211902.1  protein RUFY3 isoform X10

    Conserved Domains (3) summary
    pfam02759
    Location:161282
    RUN; RUN domain
    cl25732
    Location:316522
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:5100
    Atrophin-1; Atrophin-1 family
  11. XM_009447777.2XP_009446052.1  protein RUFY3 isoform X12

    See identical proteins and their annotated locations for XP_009446052.1

    UniProtKB/TrEMBL
    K7AUE1
    Related
    ENSPTRP00000077015.1, ENSPTRT00000108274.1
    Conserved Domains (2) summary
    COG1196
    Location:258464
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:103224
    RUN; RUN domain
  12. XM_009447776.2XP_009446051.1  protein RUFY3 isoform X11

    See identical proteins and their annotated locations for XP_009446051.1

    Conserved Domains (2) summary
    COG1196
    Location:276482
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:121242
    RUN; RUN domain
  13. XM_024356135.1XP_024211903.1  protein RUFY3 isoform X13

    Conserved Domains (2) summary
    pfam02759
    Location:50171
    RUN; RUN domain
    cl25732
    Location:203411
    SMC_N; RecF/RecN/SMC N terminal domain

RNA

  1. XR_679640.3 RNA Sequence

  2. XR_679642.3 RNA Sequence

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