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PATR-DRA major histocompatibility complex, class II, DR alpha [ Pan troglodytes (chimpanzee) ]

Gene ID: 462591, updated on 19-Mar-2021

Summary

Gene symbol
PATR-DRA
Gene description
major histocompatibility complex, class II, DR alpha
Locus tag
CK820_G0006934
See related
Ensembl:ENSPTRG00000018016
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
Patt-Dra
Orthologs
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Genomic context

See PATR-DRA in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 6 NC_036885.1 (31875028..31880515)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 6 NC_006473.4 (32685621..32691114)

Chromosome 6 - NC_036885.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104006792 Neighboring gene butyrophilin like 2 Neighboring gene major histocompatibility complex, class II, DR beta 5 Neighboring gene MHC class II antigen

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

General protein information

Preferred Names
major histocompatibility complex, class II, DR alpha
Names
MHC class II alpha chain
MHC class II antigen
MHC class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134339.1NP_001127811.1  major histocompatibility complex, class II, DR alpha precursor

    See identical proteins and their annotated locations for NP_001127811.1

    Status: PROVISIONAL

    Source sequence(s)
    AM910166
    Related
    ENSPTRP00000030766.4, ENSPTRT00000033300.4
    Conserved Domains (3) summary
    cd05767
    Location:111204
    IgC_MHC_II_alpha; Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00993
    Location:29106
    MHC_II_alpha; Class II histocompatibility antigen, alpha domain
    pfam16196
    Location:201253
    C1-set_C; C1-set C-terminal domain

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036885.1 Reference Clint_PTRv2 Primary Assembly

    Range
    31875028..31880515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)