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PRDM1 PR/SET domain 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462904, updated on 19-Mar-2021

Summary

Official Symbol
PRDM1provided by VGNC
Official Full Name
PR/SET domain 1provided by VGNC
Primary source
VGNC:VGNC:7905
Locus tag
CK820_G0000632
See related
Ensembl:ENSPTRG00000018457
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See PRDM1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 6 NC_036885.1 (103477805..103501734)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 6 NC_006473.4 (109527193..109551122)

Chromosome 6 - NC_036885.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene prolyl endopeptidase Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene uncharacterized LOC107975351 Neighboring gene autophagy related 5 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
PR domain zinc finger protein 1
Names
PR domain 1
PR domain containing 1, with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036885.1 Reference Clint_PTRv2 Primary Assembly

    Range
    103477805..103501734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_518658.5XP_518658.3  PR domain zinc finger protein 1 isoform X2

    Related
    ENSPTRP00000031523.4
    Conserved Domains (4) summary
    smart00317
    Location:100206
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:570688
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:577597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:617642
    zf-H2C2_2; Zinc-finger double domain
  2. XM_009451761.3XP_009450036.2  PR domain zinc finger protein 1 isoform X1

  3. XM_009451762.3XP_009450037.2  PR domain zinc finger protein 1 isoform X3

    Related
    ENSPTRP00000087119.1
    Conserved Domains (4) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:534652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:581606
    zf-H2C2_2; Zinc-finger double domain
  4. XM_003311532.4XP_003311580.2  PR domain zinc finger protein 1 isoform X4

    Related
    ENSPTRP00000090362.1
    Conserved Domains (4) summary
    smart00317
    Location:572
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:443463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:441463
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:483508
    zf-H2C2_2; Zinc-finger double domain
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