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MSR1 macrophage scavenger receptor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464003, updated on 19-Mar-2021

Summary

Official Symbol
MSR1provided by VGNC
Official Full Name
macrophage scavenger receptor 1provided by VGNC
Primary source
VGNC:VGNC:14634
Locus tag
CK820_G0041563
See related
Ensembl:ENSPTRG00000020013
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See MSR1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 8 NC_036887.1 (15903164..15988043, complement)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 8 NC_006475.4 (15180690..15265783, complement)

Chromosome 8 - NC_036887.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1A pseudogene Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene uncharacterized LOC107976248 Neighboring gene fibroblast growth factor 20

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
macrophage scavenger receptor types I and II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036887.1 Reference Clint_PTRv2 Primary Assembly

    Range
    15903164..15988043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016959120.1XP_016814609.1  macrophage scavenger receptor types I and II isoform X1

    Related
    ENSPTRP00000070959.1, ENSPTRT00000076921.1
    Conserved Domains (4) summary
    pfam01391
    Location:280334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350450
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
    cl26252
    Location:104269
    AAA_13; AAA domain
  2. XM_016959121.2XP_016814610.1  macrophage scavenger receptor types I and II isoform X1

    Related
    ENSPTRP00000078656.1
    Conserved Domains (4) summary
    pfam01391
    Location:280334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350450
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
    cl26252
    Location:104269
    AAA_13; AAA domain
  3. XM_016959122.2XP_016814611.1  macrophage scavenger receptor types I and II isoform X2

    Related
    ENSPTRP00000075288.1
    Conserved Domains (3) summary
    pfam01391
    Location:280334
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
    cl26252
    Location:104269
    AAA_13; AAA domain
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