SLC1A1 solute carrier family 1 member 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SLC1A1provided by VGNC
Official Full Name: solute carrier family 1 member 1provided by VGNC
Primary source: VGNC:VGNC:8928
Locus tag: CK820_G0023708
See related: Ensembl:ENSPTRG00000020739
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	11	NC_072409.2 (111321535..111418671, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	9	NC_072407.1 (7444272..7541426)

Chromosome 11 - NC_072409.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-149694 (e-PCR)
- UniSTS:177168

D9S199 (e-PCR)
- UniSTS:148270

SHGC-35927 (e-PCR)
- UniSTS:48176

RH48870 (e-PCR)
- UniSTS:82535

D9S1982 (e-PCR)
- UniSTS:3722

RH15877 (e-PCR)
- UniSTS:63143

SLC1A1_2172 (e-PCR)
- UniSTS:281004

RH70490 (e-PCR)
- UniSTS:74673

RH11999 (e-PCR)
- UniSTS:7864

G49582 (e-PCR)
- UniSTS:109251

D9S1071E (e-PCR)
- UniSTS:151288

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables L-glutamate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables cysteine transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables glutamate:sodium symporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in L-glutamate transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: excitatory amino acid transporter 3

Names: solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

111321535..111418671 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_520467.9 → XP_520467.4 excitatory amino acid transporter 3 isoform X2

UniProtKB/TrEMBL

A0A2J8M503, A0A8I3B3R9, H2R6U6, K7BDG9, K7CMU1, K7DD86

Conserved Domains (1) summary

pfam00375
Location:21 → 465

SDF; Sodium:dicarboxylate symporter family
XM_009456267.5 → XP_009454542.3 excitatory amino acid transporter 3 isoform X1

UniProtKB/TrEMBL

H2R6U6, K7DD86

Conserved Domains (1) summary

pfam00375
Location:21 → 429

SDF; Sodium:dicarboxylate symporter family