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DERA deoxyribose-phosphate aldolase [ Pan troglodytes (chimpanzee) ]

Gene ID: 465316, updated on 29-Mar-2024

Summary

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Official Symbol
DERAprovided by VGNC
Official Full Name
deoxyribose-phosphate aldolaseprovided by VGNC
Primary source
VGNC:VGNC:8399
Locus tag
CK820_G0019155
See related
Ensembl:ENSPTRG00000004735
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (23046700..23171732)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (21714977..21844097)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS7m-like Neighboring gene uncharacterized LOC107967469 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene prolyl hydroxylase EGLN3-like Neighboring gene solute carrier family 15 member 5 Neighboring gene FACT complex subunit SPT16-like Neighboring gene microsomal glutathione S-transferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase
Names
2-deoxyribose-5-phosphate aldolase homolog
deoxyribose-phosphate aldolase (putative)
XP_520770.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    23046700..23171732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_520770.7 → XP_520770.3  deoxyribose-phosphate aldolase

    See identical proteins and their annotated locations for XP_520770.3

    UniProtKB/TrEMBL
    A0A2I3T1B0, A0A2J8QPY6, A0A6D2W215, H2Q5J5
    Related
    ENSPTRP00000008082.5
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials
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