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LMO3 LIM domain only 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 465319, updated on 24-Apr-2021

Summary

Official Symbol
LMO3provided by VGNC
Official Full Name
LIM domain only 3provided by VGNC
Primary source
VGNC:VGNC:5455
Locus tag
CK820_G0019149
See related
Ensembl:ENSPTRG00000004738
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See LMO3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 12 NC_036891.1 (16784508..16846452, complement)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 12 NC_006479.4 (17173442..17235467, complement)

Chromosome 12 - NC_036891.1Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SPT16 pseudogene Neighboring gene aspartate aminotransferase, mitochondrial-like Neighboring gene S-phase kinase-associated protein 1 pseudogene Neighboring gene elongation factor 1-alpha 1 pseudogene Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
LIM domain only protein 3
Names
LIM domain only 3 (rhombotin-like 2)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036891.1 Reference Clint_PTRv2 Primary Assembly

    Range
    16784508..16846452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003313527.3XP_003313575.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003313575.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  2. XM_003313528.3XP_003313576.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003313576.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  3. XM_003952125.4XP_003952174.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003952174.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  4. XM_003313530.3XP_003313578.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_003313578.1

    Conserved Domains (2) summary
    cd09388
    Location:3185
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:95149
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  5. XM_520773.7XP_520773.3  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_520773.3

    Related
    ENSPTRP00000091913.1
    Conserved Domains (2) summary
    cd09388
    Location:2478
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  6. XM_003313529.4XP_003313577.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003313577.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  7. XM_009424925.2XP_009423200.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_009423200.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  8. XM_009424927.2XP_009423202.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_009423202.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  9. XM_009424926.2XP_009423201.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_009423201.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  10. XM_003313526.4XP_003313574.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_003313574.1

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  11. XM_009424930.3XP_009423205.2  LIM domain only protein 3 isoform X4

    Conserved Domains (2) summary
    cd09389
    Location:117171
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:3167
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
  12. XM_016923018.2XP_016778507.1  LIM domain only protein 3 isoform X3

    UniProtKB/TrEMBL
    H2Q5J8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

RNA

  1. XR_673296.3 RNA Sequence

  2. XR_673297.3 RNA Sequence

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