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SHROOM4 shroom family member 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 465636, updated on 29-Mar-2024

Summary

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Official Symbol
SHROOM4provided by VGNC
Official Full Name
shroom family member 4provided by VGNC
Primary source
VGNC:VGNC:13497
Locus tag
CK820_G0047712
See related
Ensembl:ENSPTRG00000021905
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) X NC_072421.2 (50600394..50850616, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) X NC_072421.1 (50609268..50846718, complement)

Chromosome X - NC_072421.2Genomic Context describing neighboring genes Neighboring gene cyclin B3 Neighboring gene diacylglycerol kinase kappa Neighboring gene U6 spliceosomal RNA Neighboring gene histone H3.3A-like Neighboring gene bone morphogenetic protein 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072421.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    50600394..50850616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016943400.4 → XP_016798889.1  protein Shroom4 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SDB8, A0A2J8JH45, A0A6D2WTX4, H2R4R2
    Related
    ENSPTRP00000047412.2
    Conserved Domains (2) summary
    cd00992
    Location:13 → 89
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1262 → 1486
    ASD2; Apx/Shroom domain ASD2

  2. XM_016943402.3 → XP_016798891.1  protein Shroom4 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SDB8

  3. XM_016943401.4 → XP_016798890.1  protein Shroom4 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SDB8, A0A2I3T702, A0A2J8JH33, A0A6D2XUS0
    Related
    ENSPTRP00000085001.1
    Conserved Domains (1) summary
    pfam08687
    Location:1146 → 1370
    ASD2; Apx/Shroom domain ASD2

RNA

  1. XR_010154763.1 RNA Sequence

  2. XR_001714036.3 RNA Sequence

  3. XR_001714035.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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