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OTUD4 OTU deubiquitinase 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 466922, updated on 29-Mar-2024

Summary

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Official Symbol
OTUD4provided by VGNC
Official Full Name
OTU deubiquitinase 4provided by VGNC
Primary source
VGNC:VGNC:655
Locus tag
CK820_G0016837
See related
Ensembl:ENSPTRG00000016482
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (146926599..146972923, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (146886013..146933172, complement)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 10 Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene ATP binding cassette subfamily E member 1 Neighboring gene uncharacterized LOC107974432 Neighboring gene uncharacterized LOC107974116

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of interleukin-1-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OTU domain-containing protein 4
Names
OTU domain containing 4
XP_016807778.2
XP_016807780.2
XP_016807781.2
XP_016807782.2
XP_016807783.2
XP_016807784.2
XP_054539381.1
XP_054539382.1
XP_054539383.1
XP_063665991.1
XP_063665992.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    146926599..146972923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054683407.2 → XP_054539382.1  OTU domain-containing protein 4 isoform X6

  2. XM_016952293.4 → XP_016807782.2  OTU domain-containing protein 4 isoform X5

  3. XM_016952292.4 → XP_016807781.2  OTU domain-containing protein 4 isoform X4

  4. XM_016952291.4 → XP_016807780.2  OTU domain-containing protein 4 isoform X2

  5. XM_054683406.2 → XP_054539381.1  OTU domain-containing protein 4 isoform X3

  6. XM_016952289.4 → XP_016807778.2  OTU domain-containing protein 4 isoform X1

  7. XM_016952295.4 → XP_016807784.2  OTU domain-containing protein 4 isoform X9

  8. XM_054683408.2 → XP_054539383.1  OTU domain-containing protein 4 isoform X10

  9. XM_063809922.1 → XP_063665992.1  OTU domain-containing protein 4 isoform X11

  10. XM_063809921.1 → XP_063665991.1  OTU domain-containing protein 4 isoform X8

  11. XM_016952294.4 → XP_016807783.2  OTU domain-containing protein 4 isoform X7

Nucleotide Protein
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