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TBX20 T-box transcription factor 20 [ Pan troglodytes (chimpanzee) ]

Gene ID: 467053, updated on 29-Mar-2024

Summary

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Official Symbol
TBX20provided by VGNC
Official Full Name
T-box transcription factor 20provided by VGNC
Primary source
VGNC:VGNC:14099
Locus tag
CK820_G0048227
See related
Ensembl:ENSPTRG00000019076
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (40973218..41030179, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (38608565..38665493, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107975757 Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene microRNA mir-548n Neighboring gene probable C-mannosyltransferase DPY19L2 Neighboring gene protein S100-A11-like Neighboring gene uncharacterized LOC104007155 Neighboring gene uncharacterized LOC107975759

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX20
Names
T-box 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    40973218..41030179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_522453.7 → XP_522453.3  T-box transcription factor TBX20

    See identical proteins and their annotated locations for XP_522453.3

    UniProtKB/TrEMBL
    A0A2J8JE07, A0A6D2X3X7, H2QUF0
    Related
    ENSPTRP00000032592.4
    Conserved Domains (2) summary
    pfam00907
    Location:102 → 288
    T-box; T-box
    cl26285
    Location:357 → 409
    DUF853; Bacterial protein of unknown function (DUF853)
Nucleotide Protein
Heading Accession and Version

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