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TEF TEF transcription factor, PAR bZIP family member [ Pan troglodytes (chimpanzee) ]

Gene ID: 470222, updated on 29-Mar-2024

Summary

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Official Symbol
TEFprovided by VGNC
Official Full Name
TEF transcription factor, PAR bZIP family memberprovided by VGNC
Primary source
VGNC:VGNC:7344
Locus tag
CK820_G0027531
See related
Ensembl:ENSPTRG00000014425
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 23 NC_086016.1 (43363190..43395606)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 22 NC_072420.1 (36395555..36428000)

Chromosome 23 - NC_086016.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene chondroadherin like Neighboring gene Ran GTPase activating protein 1 Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene uncharacterized LOC129138448 Neighboring gene U6 spliceosomal RNA Neighboring gene transducer of ERBB2, 2 Neighboring gene PHD finger protein 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thyrotroph embryonic factor
Names
TEF, PAR bZIP transcription factor
thyrotrophic embryonic factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    43363190..43395606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009438488.5 → XP_009436763.1  thyrotroph embryonic factor isoform X2

    See identical proteins and their annotated locations for XP_009436763.1

    UniProtKB/TrEMBL
    A0A2I3TNQ8, A0A2J8LN56, A0A6D2XUB8, K7C8K6
    Related
    ENSPTRP00000073449.1
    Conserved Domains (1) summary
    cd14695
    Location:202 → 260
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  2. XM_525607.8 → XP_525607.3  thyrotroph embryonic factor isoform X1

    See identical proteins and their annotated locations for XP_525607.3

    UniProtKB/TrEMBL
    A0A2I3RWZ7, A0A2J8LN66, A0A6D2WCA1, H2QLS2
    Related
    ENSPTRP00000024850.3
    Conserved Domains (1) summary
    cd14695
    Location:232 → 290
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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