U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL6A5 collagen type VI alpha 5 chain [ Pan troglodytes (chimpanzee) ]

Gene ID: 470923, updated on 29-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
COL6A5provided by VGNC
Official Full Name
collagen type VI alpha 5 chainprovided by VGNC
Primary source
VGNC:VGNC:11969
Locus tag
CK820_G0029966
See related
Ensembl:ENSPTRG00000015386
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
COL29A1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (133608397..133746084)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (133517681..133655449)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase family member 7-like Neighboring gene collagen alpha-4(VI) chain-like Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene collagen type VI alpha 6 chain Neighboring gene phosphoinositide-3-kinase regulatory subunit 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-5(VI) chain
Names
collagen, type XXIX, alpha 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    133608397..133746084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009446456.5 → XP_009444731.3  collagen alpha-5(VI) chain

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous