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PATR-DQA2 major histocompatibility complex, class II, DQ alpha 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 471976, updated on 29-Mar-2024

Summary

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Gene symbol
PATR-DQA2
Gene description
major histocompatibility complex, class II, DQ alpha 2
See related
Ensembl:ENSPTRG00000034186
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38627723..38633509)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38627681..38633516)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene uncharacterized LOC107975113 Neighboring gene major histocompatibility complex, class II, DQ beta 2 (pseudogene) Neighboring gene major histocompatibility complex, class II, DO beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary relationships among the primate Mhc-DQA1 and DQA2 alleles. Kenter M, et al. Immunogenetics, 1992. PMID 1612647

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DQ alpha 2 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38627723..38633509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054685683.2 → XP_054541658.1  HLA class II histocompatibility antigen, DQ alpha 2 chain

Nucleotide Protein
Heading Accession and Version

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