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TAP1 transporter 1, ATP binding cassette subfamily B member [ Canis lupus familiaris (dog) ]

Gene ID: 474866, updated on 24-Nov-2021

Summary

Official Symbol
TAP1provided by VGNC
Official Full Name
transporter 1, ATP binding cassette subfamily B memberprovided by VGNC
Primary source
VGNC:VGNC:47105
See related
EnsemblRapid:ENSCAFG00845018353
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
APT1
Orthologs
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Genomic context

See TAP1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (2705692..2714297, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (2505714..2513929, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (2578932..2587126, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (2423131..2431320, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (2504597..2512789, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (2424049..2432165, complement)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene transporter 2, ATP binding cassette subfamily B member Neighboring gene proteasome 20S subunit beta 8 Neighboring gene proteasome 20S subunit beta 9 Neighboring gene V-type proton ATPase subunit d 2-like

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
antigen peptide transporter 1
Names
ATP-binding cassette sub-family B (MDR/TAP)
transporter 1, ATP-binding cassette, sub-family B (MDR-TAP)
transporter associated with antigen presentation 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001284496.2NP_001271425.1  antigen peptide transporter 1 precursor

    See identical proteins and their annotated locations for NP_001271425.1

    Status: VALIDATED

    Source sequence(s)
    DN353993, JN656391, JN656395
    UniProtKB/TrEMBL
    H8ZYY3, Q5W414
    Related
    ENSCAFP00845025457.1, ENSCAFT00845032552.1
    Conserved Domains (1) summary
    TIGR00958
    Location:37739
    3a01208; Conjugate Transporter-2 (CT2) Family protein

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    2705692..2714297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682722.1XP_038538650.1  antigen peptide transporter 1 isoform X1

    Conserved Domains (1) summary
    TIGR00958
    Location:1538
    3a01208; Conjugate Transporter-2 (CT2) Family protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    2423131..2431320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    2504597..2512789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    2578932..2587126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2505714..2513929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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