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TREM2 triggering receptor expressed on myeloid cells 2 [ Canis lupus familiaris (dog) ]

Gene ID: 474898, updated on 28-Sep-2021

Summary

Official Symbol
TREM2provided by VGNC
Official Full Name
triggering receptor expressed on myeloid cells 2provided by VGNC
Primary source
VGNC:VGNC:47794
See related
EnsemblRapid:ENSCAFG00845014990
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
TREML1
Orthologs
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Genomic context

See TREM2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (10395282..10400132, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (9945665..9950515, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (10104147..10108997, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (9927392..9932242, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (10009135..10013985, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (9915692..9928322, complement)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene uncharacterized LOC119874160 Neighboring gene adenylate cyclase 10, soluble pseudogene Neighboring gene uncharacterized LOC111098255 Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene mitochondrial assembly of ribosomal large subunit protein 1-like

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
trem-like transcript 1 protein
Names
triggering receptor expressed on myeloid cells like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    10395282..10400132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038683466.1XP_038539394.1  trem-like transcript 1 protein

    Related
    ENSCAFP00845021153.1, ENSCAFT00845026864.1
    Conserved Domains (1) summary
    cd05716
    Location:23121
    IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    9927392..9932242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038491779.1XP_038347707.1  trem-like transcript 1 protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    10009135..10013985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617873.1XP_038473801.1  trem-like transcript 1 protein

    Conserved Domains (1) summary
    cd05716
    Location:23121
    IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    10104147..10108997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038554004.1XP_038409932.1  trem-like transcript 1 protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    9945665..9950515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532133.7XP_532133.2  trem-like transcript 1 protein

    Conserved Domains (2) summary
    smart00410
    Location:23122
    IG_like; Immunoglobulin like
    cl11960
    Location:25107
    Ig; Immunoglobulin domain
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