UBQLN1 ubiquilin 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: UBQLN1provided by VGNC
Official Full Name: ubiquilin 1provided by VGNC
Primary source: VGNC:VGNC:48084
See related: Ensembl:ENSCAFG00845006162
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	1	NC_051805.1 (76068847..76113777)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	1	NC_006583.4 (76417095..76461954)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	1	NC_049222.1 (76348320..76393178)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	1	NC_049261.1 (75882246..75927063)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	1	NC_049742.1 (75647432..75692286)

Chromosome 1 - NC_051805.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

EST9C2 (e-PCR)
- UniSTS:263441

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables polyubiquitin modification-dependent protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in autophagosome assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of macroautophagy	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in autophagosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ubiquilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051805.1 Reference ROS_Cfam_1.0

Range

76068847..76113777

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038655082.1 → XP_038511010.1 ubiquilin-1 isoform X1

UniProtKB/TrEMBL

A0A8C0LJ18, A0A8C0PPH9, A0A8I3MWP5, A0A8P0T1P3

Related

ENSCAFP00845008584.1, ENSCAFT00845010996.1

Conserved Domains (4) summary

smart00727
Location:390 → 422

STI1; Heat shock chaperonin-binding motif

cd14399
Location:546 → 585

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain
XM_038655083.1 → XP_038511011.1 ubiquilin-1 isoform X2

UniProtKB/TrEMBL

A0A8C0PY02, A0A8I3MYZ9, A0A8P0NW71

Related

ENSCAFP00845008543.1, ENSCAFT00845010949.1

Conserved Domains (4) summary

smart00727
Location:182 → 219

STI1; Heat shock chaperonin-binding motif

cd14399
Location:518 → 557

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049261.1 Alternate UMICH_Zoey_3.1

Range

75882246..75927063

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038466281.1 → XP_038322209.1 ubiquilin-1 isoform X1

Conserved Domains (4) summary

smart00727
Location:390 → 422

STI1; Heat shock chaperonin-binding motif

cd14399
Location:546 → 585

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain
XM_038466282.1 → XP_038322210.1 ubiquilin-1 isoform X2

Conserved Domains (4) summary

smart00727
Location:182 → 219

STI1; Heat shock chaperonin-binding motif

cd14399
Location:518 → 557

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049742.1 Alternate UNSW_CanFamBas_1.0

Range

75647432..75692286

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038591288.1 → XP_038447216.1 ubiquilin-1 isoform X1

Conserved Domains (4) summary

smart00727
Location:390 → 422

STI1; Heat shock chaperonin-binding motif

cd14399
Location:546 → 585

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain
XM_038591289.1 → XP_038447217.1 ubiquilin-1 isoform X2

Conserved Domains (4) summary

smart00727
Location:182 → 219

STI1; Heat shock chaperonin-binding motif

cd14399
Location:518 → 557

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049222.1 Alternate UU_Cfam_GSD_1.0

Range

76348320..76393178

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038526976.1 → XP_038382904.1 ubiquilin-1 isoform X1

UniProtKB/TrEMBL

A0A8C0LJ18, A0A8C0PPH9, A0A8I3MWP5, A0A8P0T1P3

Conserved Domains (4) summary

smart00727
Location:390 → 422

STI1; Heat shock chaperonin-binding motif

cd14399
Location:546 → 585

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain
XM_038526977.1 → XP_038382905.1 ubiquilin-1 isoform X2

UniProtKB/TrEMBL

A0A8C0PY02, A0A8I3MYZ9, A0A8P0NW71

Conserved Domains (4) summary

smart00727
Location:182 → 219

STI1; Heat shock chaperonin-binding motif

cd14399
Location:518 → 557

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

76417095..76461954

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_853048.5 → XP_858141.2 ubiquilin-1 isoform X1

UniProtKB/TrEMBL

A0A8C0LJ18, A0A8C0PPH9, A0A8I3MWP5, A0A8P0T1P3

Conserved Domains (4) summary

smart00727
Location:390 → 422

STI1; Heat shock chaperonin-binding motif

cd14399
Location:546 → 585

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain
XM_853126.5 → XP_858219.1 ubiquilin-1 isoform X2

UniProtKB/TrEMBL

A0A8C0PY02, A0A8I3MYZ9, A0A8P0NW71

Conserved Domains (4) summary

smart00727
Location:182 → 219

STI1; Heat shock chaperonin-binding motif

cd14399
Location:518 → 557

UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cd01808
Location:35 → 107

Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

cl17974
Location:213 → 256

STI1; STI1 domain