U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPON1 spondin 1 [ Canis lupus familiaris (dog) ]

Gene ID: 476864, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SPON1provided by VGNC
Official Full Name
spondin 1provided by VGNC
Primary source
VGNC:VGNC:46752
See related
Ensembl:ENSCAFG00845021179
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 21
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (37668471..37919641)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (36282149..36533323)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (37385337..37636773)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (36920031..37170925)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (37104890..37356135)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091563 Neighboring gene uncharacterized LOC119865013 Neighboring gene uncharacterized LOC111091564 Neighboring gene uncharacterized LOC106560193 Neighboring gene RAS related 2 Neighboring gene COPI coat complex subunit beta 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
spondin-1; LOW QUALITY PROTEIN: spondin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    37668471..37919641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430581.1 → XP_038286509.1  spondin-1

    UniProtKB/TrEMBL
    A0A8C0PL07, A0A8C0TA87, A0A8I3PBE9
    Related
    ENSCAFP00845029291.1, ENSCAFT00845037393.1
    Conserved Domains (4) summary
    cd08544
    Location:43 → 182
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:562 → 610
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:205 → 392
    Spond_N; Spondin_N
    pfam19028
    Location:669 → 720
    TSP1_spondin; Spondin-like TSP1 domain

RNA

  1. XR_005298810.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    36920031..37170925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505886.1 → XP_038361814.1  spondin-1

RNA

  1. XR_005342000.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    37104890..37356135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633293.1 → XP_038489221.1  spondin-1

    Conserved Domains (4) summary
    cd08544
    Location:43 → 182
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:562 → 610
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:205 → 392
    Spond_N; Spondin_N
    pfam19028
    Location:669 → 720
    TSP1_spondin; Spondin-like TSP1 domain

RNA

  1. XR_005409732.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    37385337..37636773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569110.1 → XP_038425038.1  LOW QUALITY PROTEIN: spondin-1

    UniProtKB/TrEMBL
    A0A8C0PL07, A0A8C0TA87, A0A8I3PBE9
    Conserved Domains (4) summary
    cd08544
    Location:43 → 182
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:562 → 610
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:205 → 392
    Spond_N; Spondin_N
    pfam19028
    Location:669 → 720
    TSP1_spondin; Spondin-like TSP1 domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36282149..36533323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534067.6 → XP_534067.2  spondin-1

    See identical proteins and their annotated locations for XP_534067.2

    UniProtKB/TrEMBL
    A0A8C0PL07, A0A8C0TA87, A0A8I3PBE9
    Conserved Domains (4) summary
    cd08544
    Location:43 → 182
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:562 → 610
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:205 → 392
    Spond_N; Spondin_N
    pfam19028
    Location:669 → 720
    TSP1_spondin; Spondin-like TSP1 domain

RNA

  1. XR_005313237.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.