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TBX3 T-box transcription factor 3 [ Canis lupus familiaris (dog) ]

Gene ID: 477494, updated on 28-Sep-2021

Summary

Official Symbol
TBX3provided by VGNC
Official Full Name
T-box transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:47174
See related
EnsemblRapid:ENSCAFG00845024752
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See TBX3 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (11953157..11967841, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (11753296..11767965, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (12026728..12041404, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (11914521..11929199, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (11977110..11991787, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 26 NC_006608.3 (11694885..11709594, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092531 Neighboring gene T-box transcription factor 5 Neighboring gene uncharacterized LOC119866157 Neighboring gene uncharacterized LOC119866158 Neighboring gene uncharacterized LOC111092563 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
T-box transcription factor TBX3
Names
T-box 3 (ulnar mammary syndrome)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    11953157..11967841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436803.1XP_038292731.1  T-box transcription factor TBX3 isoform X1

    Related
    ENSCAFP00845034318.1, ENSCAFT00845043796.1
    Conserved Domains (2) summary
    pfam12598
    Location:323403
    TBX; T-box transcription factor
    cd20188
    Location:104305
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
  2. XM_038436804.1XP_038292732.1  T-box transcription factor TBX3 isoform X2

    Related
    ENSCAFP00845034385.1, ENSCAFT00845043876.1
    Conserved Domains (2) summary
    pfam12598
    Location:303383
    TBX; T-box transcription factor
    cd20188
    Location:104285
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    11914521..11929199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511710.1XP_038367638.1  T-box transcription factor TBX3 isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:323403
    TBX; T-box transcription factor
    cd20188
    Location:104305
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
  2. XM_038511711.1XP_038367639.1  T-box transcription factor TBX3 isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:303383
    TBX; T-box transcription factor
    cd20188
    Location:104285
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    11977110..11991787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639390.1XP_038495318.1  T-box transcription factor TBX3 isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:323403
    TBX; T-box transcription factor
    cd20188
    Location:104305
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
  2. XM_038639391.1XP_038495319.1  T-box transcription factor TBX3 isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:303383
    TBX; T-box transcription factor
    cd20188
    Location:104285
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    12026728..12041404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575203.1XP_038431131.1  T-box transcription factor TBX3 isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:323403
    TBX; T-box transcription factor
    cd20188
    Location:104305
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
  2. XM_038575204.1XP_038431132.1  T-box transcription factor TBX3 isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:303383
    TBX; T-box transcription factor
    cd20188
    Location:104285
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    11753296..11767965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459227.1XP_038315155.1  T-box transcription factor TBX3 isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:323403
    TBX; T-box transcription factor
    cd20188
    Location:104305
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
  2. XM_038459228.1XP_038315156.1  T-box transcription factor TBX3 isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:303383
    TBX; T-box transcription factor
    cd20188
    Location:104285
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
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