GPNMB glycoprotein nmb [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: GPNMBprovided by VGNC
Official Full Name: glycoprotein nmbprovided by VGNC
Primary source: VGNC:VGNC:41389
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	14	NC_051818.1 (36845151..36877705)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	14	NC_006596.4 (36460144..36487696)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	14	NC_049235.1 (36998735..37025688)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	14	NC_049274.1 (36964735..36992553)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	14	NC_049755.1 (36662258..36689076)

Chromosome 14 - NC_051818.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables integrin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051818.1 Reference ROS_Cfam_1.0

Range

36845151..36877705

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038685954.1 → XP_038541882.1 transmembrane glycoprotein NMB isoform X1

Alternate UMICH_Zoey_3.1

Genomic

NC_049274.1 Alternate UMICH_Zoey_3.1

Range

36964735..36992553

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038494824.1 → XP_038350752.1 transmembrane glycoprotein NMB isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049755.1 Alternate UNSW_CanFamBas_1.0

Range

36662258..36689076

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038621040.1 → XP_038476968.1 transmembrane glycoprotein NMB isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049235.1 Alternate UU_Cfam_GSD_1.0

Range

36998735..37025688

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038557100.1 → XP_038413028.1 transmembrane glycoprotein NMB isoform X4

UniProtKB/TrEMBL

A0A8C0JQX2, A0A8C0PKR3, A0A8C0RZN5, A0A8P0N5R9

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

36460144..36487696

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_539472.7 → XP_539472.2 transmembrane glycoprotein NMB isoform X5

UniProtKB/TrEMBL

A0A8C0JQX2, A0A8C0PKR3, A0A8C0RZN5, A0A8P0N5R9

Conserved Domains (1) summary

cd00146
Location:253 → 313

PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...