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TBX20 T-box transcription factor 20 [ Canis lupus familiaris (dog) ]

Gene ID: 482396, updated on 5-Mar-2024

Summary

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Official Symbol
TBX20provided by VGNC
Official Full Name
T-box transcription factor 20provided by VGNC
Primary source
VGNC:VGNC:47172
See related
Ensembl:ENSCAFG00845028609
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (46832241..46887482, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (46333468..46388693, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (46994716..47045430, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (46939599..46994783, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (46616244..46671623, complement)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene uncharacterized LOC119866409 Neighboring gene dpy-19 like 2 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized LOC111098821 Neighboring gene uncharacterized LOC119865649

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: T-box transcription factor TBX20; T-box transcription factor TBX20
Names
T-box 20
T-box transcription factor TBX20-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    46832241..46887482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038686946.1 → XP_038542874.1  T-box transcription factor TBX20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZH2, A0A8C0NFR0, A0A8C0S8Q8, A0A8I3Q4U5
    Related
    ENSCAFP00845039605.1, ENSCAFT00845050513.1
    Conserved Domains (2) summary
    pfam05872
    Location:322 → 410
    DUF853; Bacterial protein of unknown function (DUF853)
    cd20193
    Location:101 → 290
    T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    46939599..46994783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495046.1 → XP_038350974.1  T-box transcription factor TBX20 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    46616244..46671623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621260.1 → XP_038477188.1  T-box transcription factor TBX20 isoform X1

    Conserved Domains (2) summary
    pfam05872
    Location:322 → 410
    DUF853; Bacterial protein of unknown function (DUF853)
    cd20193
    Location:101 → 290
    T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    46994716..47045430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557325.1 → XP_038413253.1  LOW QUALITY PROTEIN: T-box transcription factor TBX20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8Q8

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    46333468..46388693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_539513.7 → XP_539513.4  T-box transcription factor TBX20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZH2, A0A8C0NFR0, A0A8C0S8Q8, A0A8I3Q4U5
    Conserved Domains (2) summary
    pfam05872
    Location:322 → 410
    DUF853; Bacterial protein of unknown function (DUF853)
    cd20193
    Location:101 → 290
    T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins
Nucleotide Protein
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