Format

Send to:

Choose Destination

MSR1 macrophage scavenger receptor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 482891, updated on 28-Sep-2021

Summary

Official Symbol
MSR1provided by VGNC
Official Full Name
macrophage scavenger receptor 1provided by VGNC
Primary source
VGNC:VGNC:43448
See related
EnsemblRapid:ENSCAFG00845014323
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See MSR1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (41487019..41565417, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (39918454..39996751, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (40253347..40331889, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (39583887..39662157, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (40129035..40207399, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 16 NC_006598.3 (39434948..39513727, complement)

Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene tumor suppressor candidate 3 Neighboring gene uncharacterized LOC111090176 Neighboring gene annexin A2-like Neighboring gene uncharacterized LOC119869529 Neighboring gene NADPH--cytochrome P450 reductase-like

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
macrophage scavenger receptor types I and II

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051820.1 Reference ROS_Cfam_1.0

    Range
    41487019..41565417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038690038.1XP_038545966.1  macrophage scavenger receptor types I and II isoform X1

    Related
    ENSCAFP00845020189.1, ENSCAFT00845025627.1
    Conserved Domains (3) summary
    smart00202
    Location:353453
    SR; Scavenger receptor Cys-rich
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
  2. XM_038690039.1XP_038545967.1  macrophage scavenger receptor types I and II isoform X2

    Related
    ENSCAFP00845020253.1, ENSCAFT00845025700.1
    Conserved Domains (2) summary
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049276.1 Alternate UMICH_Zoey_3.1

    Range
    39583887..39662157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038497767.1XP_038353695.1  macrophage scavenger receptor types I and II isoform X1

    Conserved Domains (3) summary
    smart00202
    Location:353453
    SR; Scavenger receptor Cys-rich
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
  2. XM_038497768.1XP_038353696.1  macrophage scavenger receptor types I and II isoform X2

    Conserved Domains (2) summary
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

    Range
    40129035..40207399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038624287.1XP_038480215.1  macrophage scavenger receptor types I and II isoform X1

  2. XM_038624288.1XP_038480216.1  macrophage scavenger receptor types I and II isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

    Range
    40253347..40331889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038560236.1XP_038416164.1  macrophage scavenger receptor types I and II isoform X1

    Conserved Domains (3) summary
    smart00202
    Location:353453
    SR; Scavenger receptor Cys-rich
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
  2. XM_038560237.1XP_038416165.1  macrophage scavenger receptor types I and II isoform X2

    Conserved Domains (2) summary
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39918454..39996751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_843168.5XP_848261.1  macrophage scavenger receptor types I and II isoform X1

    Conserved Domains (3) summary
    smart00202
    Location:353453
    SR; Scavenger receptor Cys-rich
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
  2. XM_005629930.4XP_005629987.1  macrophage scavenger receptor types I and II isoform X2

    UniProtKB/TrEMBL
    E2RCI1
    Conserved Domains (2) summary
    pfam01391
    Location:280337
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121169
    Macscav_rec; Macrophage scavenger receptor
Support Center