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MS4A1 membrane spanning 4-domains A1 [ Canis lupus familiaris (dog) ]

Gene ID: 485430, updated on 28-Sep-2021

Summary

Official Symbol
MS4A1provided by VGNC
Official Full Name
membrane spanning 4-domains A1provided by VGNC
Primary source
VGNC:VGNC:52268
See related
EnsemblRapid:ENSCAFG00845020720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
CD20
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Genomic context

See MS4A1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (51895623..51907069)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (50162433..50173865)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (51664248..51675690)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (50941639..50953065)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (51040140..51051579)
105 previous assembly CanFam3.1 (GCF_000002285.3) 21 NC_006603.3 (50722142..50734934)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene membrane spanning 4-domains A14 Neighboring gene membrane spanning 4-domains A5 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102156346 Neighboring gene microRNA mir-8813-1

Genomic regions, transcripts, and products

Bibliography

General gene information

Homology

Gene Ontology Provided by GO

Process Evidence Code Pubs
involved_in B cell activation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
B-lymphocyte antigen CD20
Names
membrane-spanning 4-domains, subfamily A, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048028.1NP_001041493.1  B-lymphocyte antigen CD20

    See identical proteins and their annotated locations for NP_001041493.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210085
    UniProtKB/Swiss-Prot
    Q3C2E2
    Related
    ENSCAFP00845028628.1, ENSCAFT00845036583.1
    Conserved Domains (1) summary
    pfam04103
    Location:51216
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    51895623..51907069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429506.1XP_038285434.1  B-lymphocyte antigen CD20 isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:51216
    CD20; CD20-like family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    50941639..50953065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    51040140..51051579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    51664248..51675690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    50162433..50173865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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