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TTC28 tetratricopeptide repeat domain 28 [ Canis lupus familiaris (dog) ]

Gene ID: 486337, updated on 5-Mar-2024

Summary

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Official Symbol
TTC28provided by VGNC
Official Full Name
tetratricopeptide repeat domain 28provided by VGNC
Primary source
VGNC:VGNC:47948
See related
Ensembl:ENSCAFG00845030026
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TTC28 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (21791433..22422646, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (21296028..21921221, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (21833583..22458996, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (21508751..22133080, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (21763432..22396706, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092504 Neighboring gene phosphatidylinositol transfer protein beta Neighboring gene uncharacterized LOC119866201 Neighboring gene signal recognition particle 19 kDa protein-like Neighboring gene 40S ribosomal protein S12-like Neighboring gene 40S ribosomal protein S18-like Neighboring gene checkpoint kinase 2 Neighboring gene U6 spliceosomal RNA Neighboring gene HscB mitochondrial iron-sulfur cluster cochaperone Neighboring gene coiled-coil domain containing 117

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 28
XP_005636444.2
XP_038293042.1
XP_038293043.1
XP_038315148.1
XP_038367947.1
XP_038367948.1
XP_038431447.1
XP_038431448.1
XP_038495639.1
XP_038495640.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    21791433..22422646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038437114.1 → XP_038293042.1  tetratricopeptide repeat protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R5Y4, A0A8C0TXB7, A0A8I3Q252
    Related
    ENSCAFP00845041763.1, ENSCAFT00845053191.1
    Conserved Domains (6) summary
    PHA03247
    Location:1961 → 2403
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:2154 → 2364
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:47 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:91 → 121
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:957 → 1029
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1390 → 1713
    CHAT; CHAT domain

  2. XM_038437115.1 → XP_038293043.1  tetratricopeptide repeat protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R5Y4
    Conserved Domains (7) summary
    PHA03247
    Location:1843 → 2285
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:576 → 877
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    PRK07764
    Location:2036 → 2246
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:9 → 819
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:476 → 504
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:881 → 951
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1272 → 1595
    CHAT; CHAT domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    21508751..22133080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512019.1 → XP_038367947.1  tetratricopeptide repeat protein 28 isoform X1

    Conserved Domains (6) summary
    PHA03247
    Location:1961 → 2403
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:2154 → 2364
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:47 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:91 → 121
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:957 → 1029
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1390 → 1713
    CHAT; CHAT domain

  2. XM_038512020.1 → XP_038367948.1  tetratricopeptide repeat protein 28 isoform X2

    Conserved Domains (7) summary
    PHA03247
    Location:1843 → 2285
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:576 → 877
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    PRK07764
    Location:2036 → 2246
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:9 → 819
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:476 → 504
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:881 → 951
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1272 → 1595
    CHAT; CHAT domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    21763432..22396706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639711.1 → XP_038495639.1  tetratricopeptide repeat protein 28 isoform X1

    Conserved Domains (6) summary
    PHA03247
    Location:1961 → 2403
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:2154 → 2364
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:47 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:91 → 121
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:957 → 1029
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1390 → 1713
    CHAT; CHAT domain

  2. XM_038639712.1 → XP_038495640.1  tetratricopeptide repeat protein 28 isoform X2

    Conserved Domains (7) summary
    PHA03247
    Location:1843 → 2285
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:576 → 877
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    PRK07764
    Location:2036 → 2246
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:9 → 819
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:476 → 504
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:881 → 951
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1272 → 1595
    CHAT; CHAT domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    21833583..22458996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575519.1 → XP_038431447.1  tetratricopeptide repeat protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R5Y4, A0A8C0TXB7, A0A8I3Q252
    Conserved Domains (6) summary
    PHA03247
    Location:1961 → 2403
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:2154 → 2364
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:47 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:91 → 121
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:957 → 1029
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1390 → 1713
    CHAT; CHAT domain

  2. XM_038575520.1 → XP_038431448.1  tetratricopeptide repeat protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R5Y4
    Conserved Domains (7) summary
    PHA03247
    Location:1843 → 2285
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:576 → 877
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    PRK07764
    Location:2036 → 2246
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:9 → 819
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:476 → 504
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:881 → 951
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1272 → 1595
    CHAT; CHAT domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21296028..21921221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005636387.4 → XP_005636444.2  tetratricopeptide repeat protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R5Y4, A0A8C0TXB7, A0A8I3Q252
    Conserved Domains (6) summary
    PHA03247
    Location:1961 → 2403
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:2154 → 2364
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:47 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:91 → 121
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:957 → 1029
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1390 → 1713
    CHAT; CHAT domain

  2. XM_038459220.1 → XP_038315148.1  tetratricopeptide repeat protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R5Y4
    Conserved Domains (7) summary
    PHA03247
    Location:1843 → 2285
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:576 → 877
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    PRK07764
    Location:2036 → 2246
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02917
    Location:9 → 819
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:476 → 504
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:881 → 951
    TPR_12; Tetratricopeptide repeat
    pfam12770
    Location:1272 → 1595
    CHAT; CHAT domain
Nucleotide Protein
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