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CSTA cystatin A [ Canis lupus familiaris (dog) ]

Gene ID: 488008, updated on 28-Sep-2021

Summary

Official Symbol
CSTAprovided by VGNC
Official Full Name
cystatin Aprovided by VGNC
Primary source
VGNC:VGNC:39681
See related
EnsemblRapid:ENSCAFG00845023052
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See CSTA in Genome Data Viewer
Location:
chromosome: 33
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (25713544..25724803)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (25502665..25513886)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (26111536..26122737)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (25510851..25522081)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (25553550..25564806)
105 previous assembly CanFam3.1 (GCF_000002285.3) 33 NC_006615.3 (25477789..25489123)

Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153132 Neighboring gene calcium sensing receptor Neighboring gene 60S ribosomal protein L8-like Neighboring gene uncharacterized LOC111093725 Neighboring gene mitochondrial matrix import factor 23 Neighboring gene family with sequence similarity 162 member A

Genomic regions, transcripts, and products

General gene information

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051837.1 Reference ROS_Cfam_1.0

    Range
    25713544..25724803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445124.1XP_038301052.1  cystatin-A

    Related
    ENSCAFP00845031850.1, ENSCAFT00845040690.1
    Conserved Domains (1) summary
    pfam00031
    Location:492
    Cystatin; Cystatin domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049293.1 Alternate UMICH_Zoey_3.1

    Range
    25510851..25522081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519378.1XP_038375306.1  cystatin-A

    Conserved Domains (1) summary
    pfam00031
    Location:492
    Cystatin; Cystatin domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

    Range
    25553550..25564806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647393.1XP_038503321.1  cystatin-A

    Conserved Domains (1) summary
    pfam00031
    Location:492
    Cystatin; Cystatin domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

    Range
    26111536..26122737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583005.1XP_038438933.1  cystatin-A

    Conserved Domains (1) summary
    pfam00031
    Location:492
    Cystatin; Cystatin domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25502665..25513886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_545130.7XP_545130.3  cystatin-A

    UniProtKB/TrEMBL
    F1PHB6
    Conserved Domains (1) summary
    pfam00031
    Location:492
    Cystatin; Cystatin domain
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