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H2AC16 H2A clustered histone 16 [ Canis lupus familiaris (dog) ]

Gene ID: 488304, updated on 22-Jan-2024

Summary

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Official Symbol
H2AC16provided by VGNC
Official Full Name
H2A clustered histone 16provided by VGNC
Primary source
VGNC:VGNC:83727
See related
Ensembl:ENSCAFG00845015874
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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Location:
chromosome: 35
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (25234569..25235023)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (24900830..24901284)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (26526681..26527135)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (25009543..25009997)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (25062695..25063149)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene H2A clustered histone 15 Neighboring gene H2B clustered histone 15 Neighboring gene H1.5 linker histone, cluster member Neighboring gene H3 clustered histone 11 Neighboring gene H4 clustered histone 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H2A type 1-H-like; histone H2A-beta, sperm-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    25234569..25235023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446681.1 → XP_038302609.1  histone H2A type 1-H-like

    UniProtKB/TrEMBL
    A0A8C0JM99
    Related
    ENSCAFP00845022218.1, ENSCAFT00845028238.1
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 119
    PTZ00017; histone H2A; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    25009543..25009997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520840.1 → XP_038376768.1  histone H2A type 1-H-like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    25062695..25063149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648897.1 → XP_038504825.1  histone H2A type 1-H-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    26526681..26527135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584489.1 → XP_038440417.1  histone H2A type 1-H-like

    UniProtKB/TrEMBL
    A0A8C0JM99

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24900830..24901284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014110498.3 → XP_013965973.1  histone H2A-beta, sperm-like

    UniProtKB/TrEMBL
    A0A8C0JM99
    Conserved Domains (2) summary
    smart00414
    Location:17 → 122
    H2A; Histone 2A
    cd00074
    Location:6 → 119
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
Nucleotide Protein
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