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H2AC17 H2A clustered histone 17 [ Canis lupus familiaris (dog) ]

Gene ID: 488308, updated on 22-Jan-2024

Summary

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Official Symbol
H2AC17provided by VGNC
Official Full Name
H2A clustered histone 17provided by VGNC
Primary source
VGNC:VGNC:83730
See related
Ensembl:ENSCAFG00845015983
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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Location:
chromosome: 35
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (25249889..25250729, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (24915949..24916711, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (26542003..26542783, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (25024648..25025488, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (25078012..25078792, complement)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene H4 clustered histone 13 Neighboring gene H3 clustered histone 12 Neighboring gene histone H2B type 1-C/E/F/G/I Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H2A type 1-E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    25249889..25250729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446622.1 → XP_038302550.1  histone H2A type 1-E isoform X1

    UniProtKB/TrEMBL
    A0A8C0S313
    Related
    ENSCAFP00845022357.1, ENSCAFT00845028420.1
    Conserved Domains (1) summary
    PTZ00017
    Location:22 → 151
    PTZ00017; histone H2A; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    25024648..25025488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520751.1 → XP_038376679.1  histone H2A type 1-E isoform X1

    Conserved Domains (1) summary
    PTZ00017
    Location:22 → 151
    PTZ00017; histone H2A; Provisional

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    25078012..25078792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648832.1 → XP_038504760.1  histone H2A type 1-E isoform X2

    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    26542003..26542783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584434.1 → XP_038440362.1  histone H2A type 1-E isoform X3

    UniProtKB/TrEMBL
    A0A5F4CIE3, A0A8C0JNL4, A0A8C0NV55, A0A8C0S313
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24915949..24916711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014110519.3 → XP_013965994.3  histone H2A type 1-E isoform X4

    UniProtKB/TrEMBL
    A0A5F4CIE3, A0A8C0JNL4, A0A8C0NV55, A0A8C0S313
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional
Nucleotide Protein
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