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PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 489996, updated on 2-Oct-2021

Summary

Gene symbol
PDXDC1
Gene description
pyridoxal dependent decarboxylase domain containing 1
See related
EnsemblRapid:ENSCAFG00845009652
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See PDXDC1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (28575086..28627490)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (29775401..29827771)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (28674049..28726485)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (28378225..28430611)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (28268376..28320734)
105 previous assembly CanFam3.1 (GCF_000002285.3) 6 NC_006588.3 (28412211..28464522)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene uncharacterized LOC111096298 Neighboring gene small nucleolar RNA SNORD45 Neighboring gene N-terminal asparagine amidase Neighboring gene uncharacterized LOC111096299 Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1
XP_005621577.1
XP_005621578.1
XP_013970081.1
XP_022275752.1
XP_022275753.1
XP_022275754.1
XP_022275755.1
XP_038334985.1
XP_038334986.1
XP_038334987.1
XP_038334988.1
XP_038334989.1
XP_038334990.1
XP_038334991.1
XP_038334992.1
XP_038396212.1
XP_038396213.1
XP_038396214.1
XP_038396215.1
XP_038396216.1
XP_038396217.1
XP_038396218.1
XP_038396219.1
XP_038460313.1
XP_038460314.1
XP_038460315.1
XP_038460316.1
XP_038460317.1
XP_038460319.1
XP_038460320.1
XP_038460321.1
XP_038525019.1
XP_038525020.1
XP_038525021.1
XP_038525022.1
XP_038525023.1
XP_038525024.1
XP_038525025.1
XP_038525026.1
XP_547116.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    28575086..28627490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669092.1XP_038525020.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Related
    ENSCAFP00845013735.1, ENSCAFT00845017641.1
    Conserved Domains (1) summary
    cl18945
    Location:171393
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  2. XM_038669098.1XP_038525026.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  3. XM_038669091.1XP_038525019.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    Related
    ENSCAFP00845013414.1, ENSCAFT00845017212.1
    Conserved Domains (1) summary
    cl18945
    Location:172394
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  4. XM_038669097.1XP_038525025.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  5. XM_038669095.1XP_038525023.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  6. XM_038669093.1XP_038525021.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Related
    ENSCAFP00845013861.1, ENSCAFT00845017794.1
    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  7. XM_038669094.1XP_038525022.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_038669096.1XP_038525024.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    cl18945
    Location:115337
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    28378225..28430611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479058.1XP_038334986.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cl18945
    Location:171393
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  2. XM_038479064.1XP_038334992.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  3. XM_038479057.1XP_038334985.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cl18945
    Location:172394
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  4. XM_038479063.1XP_038334991.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  5. XM_038479061.1XP_038334989.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  6. XM_038479059.1XP_038334987.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  7. XM_038479060.1XP_038334988.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_038479062.1XP_038334990.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    cl18945
    Location:115337
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    28268376..28320734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604391.1XP_038460319.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  2. XM_038604385.1XP_038460313.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cl18945
    Location:172394
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  3. XM_038604386.1XP_038460314.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cl18945
    Location:171393
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  4. XM_038604393.1XP_038460321.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  5. XM_038604389.1XP_038460317.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  6. XM_038604387.1XP_038460315.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  7. XM_038604388.1XP_038460316.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_038604392.1XP_038460320.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    cl18945
    Location:115337
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    28674049..28726485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540289.1XP_038396217.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

  2. XM_038540284.1XP_038396212.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

  3. XM_038540285.1XP_038396213.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

  4. XM_038540291.1XP_038396219.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

  5. XM_038540288.1XP_038396216.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  6. XM_038540286.1XP_038396214.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

  7. XM_038540287.1XP_038396215.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  8. XM_038540290.1XP_038396218.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29775401..29827771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022420044.2XP_022275752.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cl18945
    Location:171393
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  2. XM_022420047.2XP_022275755.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  3. XM_547116.6XP_547116.2  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    F1PRF8
    Conserved Domains (1) summary
    cl18945
    Location:172394
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  4. XM_014114606.3XP_013970081.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  5. XM_022420046.2XP_022275754.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  6. XM_005621520.4XP_005621577.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:157379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  7. XM_022420045.2XP_022275753.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:156378
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
  8. XM_005621521.3XP_005621578.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    cl18945
    Location:115337
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
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