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ODF2 outer dense fiber of sperm tails 2 [ Homo sapiens (human) ]

Gene ID: 4957, updated on 11-Apr-2024

Summary

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Official Symbol
ODF2provided by HGNC
Official Full Name
outer dense fiber of sperm tails 2provided by HGNC
Primary source
HGNC:HGNC:8114
See related
Ensembl:ENSG00000136811 MIM:602015; AllianceGenome:HGNC:8114
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT134; ODF84; ODF2/1; ODF2/2
Summary
The outer dense fibers are cytoskeletal structures that surround the axoneme in the middle piece and principal piece of the sperm tail. The fibers function in maintaining the elastic structure and recoil of the sperm tail as well as in protecting the tail from shear forces during epididymal transport and ejaculation. Defects in the outer dense fibers lead to abnormal sperm morphology and infertility. This gene encodes one of the major outer dense fiber proteins. Alternative splicing results in multiple transcript variants. The longer transcripts, also known as 'Cenexins', encode proteins with a C-terminal extension that are differentially targeted to somatic centrioles and thought to be crucial for the formation of microtubule organizing centers. [provided by RefSeq, Oct 2010]
Expression
Biased expression in testis (RPKM 95.4), lymph node (RPKM 8.1) and 9 other tissues See more
Orthologs
mouse all
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Genomic context

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Location:
9q34.11
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (128455185..128501292)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (140662221..140708139)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (131217464..131263571)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29081 Neighboring gene cerebral endothelial cell adhesion molecule Neighboring gene ReSE screen-validated silencer GRCh37_chr9:131200897-131201070 Neighboring gene protein PAT1 homolog 1-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131217358-131218094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131218095-131218830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:131218831-131219566 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:131219567-131220302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131234689-131235190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131235191-131235690 Neighboring gene ODF2 antisense RNA 1 Neighboring gene uncharacterized LOC124902281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:131257065-131257565 Neighboring gene Sharpr-MPRA regulatory region 9551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29084 Neighboring gene GLE1 RNA export mediator Neighboring gene uncharacterized LOC101929270 Neighboring gene RNA, U7 small nuclear 171 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Sperm DNA fragmentation and apoptosis in the sperm of men with oligozoospermia are closely related to anti-ODF2 autoantibodies. Kiani A, et al. Pathol Res Pract, 2023 May. PMID 37086632
  2. The Mother Centriole Appendage Protein Cenexin Modulates Lumen Formation through Spindle Orientation. Hung HF, et al. Curr Biol, 2016 Mar 21. PMID 26948879, Free PMC Article
  3. Cep128 associates with Odf2 to form the subdistal appendage of the centriole. Kashihara H, et al. Genes Cells, 2019 Mar. PMID 30623524
  4. Cdk5 in the centriolar appendages mediates cenexin1 localization and primary cilia formation. Rosales JL, et al. Cell Cycle, 2010 May 15. PMID 20234188
  5. Plk1-dependent and -independent roles of an ODF2 splice variant, hCenexin1, at the centrosome of somatic cells. Soung NK, et al. Dev Cell, 2009 Apr. PMID 19386263, Free PMC Article

See all (64) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Sperm DNA fragmentation and apoptosis in the sperm of men with oligozoospermia are closely related to anti-ODF2 autoantibodies.
    Title: Sperm DNA fragmentation and apoptosis in the sperm of men with oligozoospermia are closely related to anti-ODF2 autoantibodies.
  2. Pericentriolar matrix (PCM) integrity relies on cenexin and polo-like kinase (PLK)1.
    Title: Pericentriolar matrix (PCM) integrity relies on cenexin and polo-like kinase (PLK)1.
  3. alpha-/gamma-Taxilin are required for centriolar subdistal appendage assembly and microtubule organization.
    Title: α-/γ-Taxilin are required for centriolar subdistal appendage assembly and microtubule organization.
  4. MicroRNA-targeting in spermatogenesis: Over-expressions of microRNA-23a/b-3p and its affected targeting of the genes ODF2 and UBQLN3 in spermatozoa of patients with oligoasthenozoospermia.
    Title: MicroRNA-targeting in spermatogenesis: Over-expressions of microRNA-23a/b-3p and its affected targeting of the genes ODF2 and UBQLN3 in spermatozoa of patients with oligoasthenozoospermia.
  5. C3G localizes to the mother centriole in a cenexin-dependent manner and regulates centrosome duplication and primary cilium length.
    Title: C3G localizes to the mother centriole in a cenexin-dependent manner and regulates centrosome duplication and primary cilium length.
  6. Odf2 interacts with Cep128 to form the subdistal appendage of the centriole.
    Title: Cep128 associates with Odf2 to form the subdistal appendage of the centriole.
  7. Cenexin controls centrosome positioning during cell migration by modulating microtubule organization and stability.Cenexin is required for spindle orientation.
    Title: The Mother Centriole Appendage Protein Cenexin Modulates Lumen Formation through Spindle Orientation.
  8. Cby plays an important role in organization of both primary and motile cilia in collaboration with Cnx.
    Title: A Wnt/beta-catenin pathway antagonist Chibby binds Cenexin at the distal end of mother centrioles and functions in primary cilia formation.
  9. Trichoplein controls microtubule anchoring at the centrosome by binding to Odf2 and ninein.
    Title: Trichoplein controls microtubule anchoring at the centrosome by binding to Odf2 and ninein.
  10. Cdk5 in the centriolar appendages mediates cenexin1 localization and primary cilia formation.
    Title: Cdk5 in the centriolar appendages mediates cenexin1 localization and primary cilia formation.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC9034, FLJ44866, MGC111096

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural molecule activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in centriole-centriole cohesion IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in cilium organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein localization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of centriolar subdistal appendage IDA
Inferred from Direct Assay
more info
 PubMed 
located_in centriole IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus HDA PubMed 
located_in sperm flagellum ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in sperm midpiece ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in sperm principal piece ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
outer dense fiber protein 2
Names
cancer/testis antigen 134
cenexin 1
outer dense fiber of sperm tails, 84-kD
sperm tail structural protein
testis tissue sperm-binding protein Li 51e

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029568.2 RefSeqGene

    Range
    5823..51109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001242352.2 → NP_001229281.1  outer dense fiber protein 2 isoform 11

    See identical proteins and their annotated locations for NP_001229281.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) uses two alternate splice sites in the 5' coding region, compared to variant 1. The resulting isoform (11) has a shorter N-terminus and contains an additional internal segment compared to isoform 1.
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56590.1
    UniProtKB/Swiss-Prot
    Q5BJF6
    Related
    ENSP00000361893.5, ENST00000372807.10
    Conserved Domains (1) summary
    cl25732
    Location:114 → 798
    SMC_N; RecF/RecN/SMC N terminal domain

  2. NM_001242353.2 → NP_001229282.1  outer dense fiber protein 2 isoform 2

    See identical proteins and their annotated locations for NP_001229282.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) contains an alternate exon, lacks an exon and uses an alternate splice site in the 5' coding region, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus and lacks an alternate internal segment compared to isoform 1. Variants 2 and 10 both encode the same isoform (2).
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56588.1
    UniProtKB/Swiss-Prot
    B1AND3, B4DRK4, B4DX73, B4DZ02, E7EWL2, F5H6J4, O14721, O60631, Q1W2J6, Q5BJF6, Q6UN26, Q7Z5I6, Q96FN2
    Related
    ENSP00000473949.2, ENST00000604420.5
    Conserved Domains (1) summary
    COG1196
    Location:119 → 803
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001242354.2 → NP_001229283.1  outer dense fiber protein 2 isoform 8

    See identical proteins and their annotated locations for NP_001229283.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) uses an alternate splice site in the 5' coding region, lacks an alternate in-frame exon, and differs in the 3' UTR and coding sequence, compared to variant 1. The resulting isoform (8) is shorter at the N-terminus, lacks an alternate internal segment, and has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56589.1
    UniProtKB/TrEMBL
    B4DUU0
    Related
    ENSP00000396687.2, ENST00000448249.8
    Conserved Domains (1) summary
    cl25732
    Location:165 → 485
    SMC_N; RecF/RecN/SMC N terminal domain

  4. NM_001351577.1 → NP_001338506.1  outer dense fiber protein 2 isoform 12

    Status: REVIEWED

    Source sequence(s)
    AI478559, AL043836, AL445287, BE263555, BM824222, BQ896996, CN368207, DB094573, DC295950, HY281035
    Conserved Domains (1) summary
    cl25732
    Location:202 → 930
    SMC_N; RecF/RecN/SMC N terminal domain

  5. NM_001351578.2 → NP_001338507.1  outer dense fiber protein 2 isoform 13

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS94498.1
    UniProtKB/TrEMBL
    A0A8J8YVX4
    Related
    ENSP00000342581.4, ENST00000351030.8
    Conserved Domains (1) summary
    cl25732
    Location:202 → 886
    SMC_N; RecF/RecN/SMC N terminal domain

  6. NM_001351579.2 → NP_001338508.1  outer dense fiber protein 2 isoform 14

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    cl25732
    Location:241 → 561
    SMC_N; RecF/RecN/SMC N terminal domain

  7. NM_001351580.2 → NP_001338509.1  outer dense fiber protein 2 isoform 14

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    cl25732
    Location:241 → 561
    SMC_N; RecF/RecN/SMC N terminal domain

  8. NM_001351581.1 → NP_001338510.1  outer dense fiber protein 2 isoform 15

    Status: REVIEWED

    Source sequence(s)
    AI478559, AK299303, AL445287, DB094573
    Conserved Domains (1) summary
    cl25732
    Location:163 → 847
    SMC_N; RecF/RecN/SMC N terminal domain

  9. NM_001351582.2 → NP_001338511.1  outer dense fiber protein 2 isoform 16

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    COG1196
    Location:158 → 842
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. NM_001351583.2 → NP_001338512.1  outer dense fiber protein 2 isoform 17

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    cl25732
    Location:222 → 542
    SMC_N; RecF/RecN/SMC N terminal domain

  11. NM_001351584.2 → NP_001338513.1  outer dense fiber protein 2 isoform 11

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56590.1
    Conserved Domains (1) summary
    cl25732
    Location:114 → 798
    SMC_N; RecF/RecN/SMC N terminal domain

  12. NM_001351585.2 → NP_001338514.1  outer dense fiber protein 2 isoform 11

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56590.1
    Conserved Domains (1) summary
    cl25732
    Location:114 → 798
    SMC_N; RecF/RecN/SMC N terminal domain

  13. NM_001351586.2 → NP_001338515.1  outer dense fiber protein 2 isoform 9

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    UniProtKB/TrEMBL
    A0A024R8A5
    Conserved Domains (1) summary
    COG1196
    Location:95 → 779
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  14. NM_001351587.2 → NP_001338516.1  outer dense fiber protein 2 isoform 18

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    cl25732
    Location:111 → 745
    SMC_N; RecF/RecN/SMC N terminal domain

  15. NM_001351588.2 → NP_001338517.1  outer dense fiber protein 2 isoform 19

    Status: REVIEWED

    Source sequence(s)
    AL359091, AL445287
    Conserved Domains (1) summary
    cl25732
    Location:92 → 726
    SMC_N; RecF/RecN/SMC N terminal domain

  16. NM_002540.5 → NP_002531.3  outer dense fiber protein 2 isoform 9

    See identical proteins and their annotated locations for NP_002531.3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) contains two alternate exons in the 5' coding region, compared to variant 1. The resulting isoform (9) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL359091, AL445287
    UniProtKB/TrEMBL
    A0A024R8A5
    Conserved Domains (1) summary
    COG1196
    Location:95 → 779
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  17. NM_153432.1 → NP_702910.1  outer dense fiber protein 2 isoform 3

    See identical proteins and their annotated locations for NP_702910.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 3' UTR and has multiple coding region differences, compared to variant 1. The resulting protein (isoform 3) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AK093367, AL359091, DB094573, DB511337
    Consensus CDS
    CCDS56586.1
    UniProtKB/TrEMBL
    B4DX03
    Related
    ENSP00000361901.3, ENST00000372814.7
    Conserved Domains (1) summary
    COG1196
    Location:290 → 627
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  18. NM_153433.2 → NP_702911.1  outer dense fiber protein 2 isoform 2

    See identical proteins and their annotated locations for NP_702911.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple 5' coding region differences, compared to variant 1. The resulting protein (isoform 2) has a distinct N-terminus and is shorter than isoform 1. Variants 2 and 10 both encode the same isoform (2).
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56588.1
    UniProtKB/Swiss-Prot
    B1AND3, B4DRK4, B4DX73, B4DZ02, E7EWL2, F5H6J4, O14721, O60631, Q1W2J6, Q5BJF6, Q6UN26, Q7Z5I6, Q96FN2
    Related
    ENSP00000403453.2, ENST00000434106.7
    Conserved Domains (1) summary
    COG1196
    Location:119 → 803
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  19. NM_153435.1 → NP_702913.1  outer dense fiber protein 2 isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AL445287, AY366499, DB094573
    Consensus CDS
    CCDS94497.1
    UniProtKB/TrEMBL
    A0A8J8Z1C3
    Related
    ENSP00000377161.6, ENST00000393527.8
    Conserved Domains (1) summary
    pfam00038
    Location:529 → 857
    Filament; Intermediate filament protein

  20. NM_153436.2 → NP_702914.1  outer dense fiber protein 2 isoform 4

    See identical proteins and their annotated locations for NP_702914.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, 3' UTR, and coding region, compared to variant 1. The resulting protein (isoform 4) has distinct N- and C-termini and is shorter than isoform 1.
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56585.1
    UniProtKB/TrEMBL
    B4DX85
    Related
    ENSP00000377166.2, ENST00000393533.6
    Conserved Domains (2) summary
    COG1196
    Location:246 → 566
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:104 → 384
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  21. NM_153437.3 → NP_702915.1  outer dense fiber protein 2 isoform 6

    See identical proteins and their annotated locations for NP_702915.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, 3' UTR, and coding region, compared to variant 1. The resulting protein (isoform 6) has distinct N- and C-termini and is shorter than isoform 1.
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS6902.1
    UniProtKB/TrEMBL
    B4DX85
    Related
    ENSP00000361877.3, ENST00000372791.8
    Conserved Domains (2) summary
    COG1196
    Location:227 → 547
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:85 → 365
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  22. NM_153439.1 → NP_702917.1  outer dense fiber protein 2 isoform 5

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 3' UTR and lacks an in-frame exon in the 5' coding region, compared to variant 1. The resulting protein (isoform 5) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AK301754, AL359091, DB094573, DB511337
    UniProtKB/TrEMBL
    B4DX03
    Conserved Domains (2) summary
    COG1196
    Location:271 → 606
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:129 → 409
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  23. NM_153440.2 → NP_702918.1  outer dense fiber protein 2 isoform 7

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR, 3' UTR, and coding region, compared to variant 1. The resulting protein (isoform 7) has distinct N- and C-termini and is shorter than isoform 1.
    Source sequence(s)
    AL359091, AL445287
    Consensus CDS
    CCDS56587.1
    UniProtKB/TrEMBL
    B4DX85
    Related
    ENSP00000437579.1, ENST00000546203.5
    Conserved Domains (2) summary
    COG1196
    Location:227 → 547
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02169
    Location:85 → 365
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    128455185..128501292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    140662221..140708139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BJF6.1 GenPept UniProtKB/Swiss-Prot:Q5BJF6

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