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PCDHA12 protocadherin alpha 12 [ Gallus gallus (chicken) ]

Gene ID: 497222, updated on 5-Mar-2024

Summary

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Official Symbol
PCDHA12provided by CGNC
Official Full Name
protocadherin alpha 12provided by CGNC
Primary source
CGNC:54334
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CNRv12
Annotation information
Annotation category: suggests misassembly
Annotation category: not annotated on reference assembly
Orthologs
human mouse all
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Genomic context

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See PCDHA12 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (1247917..1335977)

Chromosome 13 - NC_052585.1Genomic Context describing neighboring genes Neighboring gene protocadherin alpha-3-like Neighboring gene protocadherin alpha 11 Neighboring gene protocadherin alpha 5 Neighboring gene protocadherin alpha 1 Neighboring gene protocadherin alpha 4 Neighboring gene protocadherin alpha 3 Neighboring gene protocadherin alpha 6 Neighboring gene protocadherin alpha 7 Neighboring gene protocadherin alpha 8 Neighboring gene protocadherin alpha 9 Neighboring gene protocadherin alpha subfamily C, 1 Neighboring gene protocadherin alpha subfamily C, 2 Neighboring gene protocadherin beta-15-like Neighboring gene protocadherin beta-15-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052585.1 Chromosome 13 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distinct genomic sequence of the CNR/Pcdhalpha genes in chicken. Sugino H, et al. Biochem Biophys Res Commun, 2004 Apr 2. PMID 15020237

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Complete genomic sequence and organization of the Gallus gallus protocadherin alpha gene
    Title: Distinct genomic sequence of the CNR/Pcdhalpha genes in chicken.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
protocadherin alpha-12
Names
cadherin-related neuronal receptor 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111129.2 → NP_001104599.2  protocadherin alpha-12 precursor

    Status: VALIDATED

    Source sequence(s)
    AADN05000074
    UniProtKB/TrEMBL
    Q6R0I0
    Conserved Domains (3) summary
    cd11304
    Location:244 → 344
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:28 → 109
    Cadherin_2; Cadherin-like
    pfam15974
    Location:844 → 986
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1247917..1335977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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