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Heatr6 HEAT repeat containing 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 497972, updated on 30-Sep-2021

Summary

Official Symbol
Heatr6provided by RGD
Official Full Name
HEAT repeat containing 6provided by RGD
Primary source
RGD:1566204
See related
EnsemblRapid:ENSRNOG00000002542
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566204
Expression
Biased expression in Thymus (RPKM 56.3), Adrenal (RPKM 48.9) and 9 other tissues See more
Orthologs
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Genomic context

See Heatr6 in Genome Data Viewer
Location:
10q26
Exon count:
20
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (68634855..68665445)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (71054344..71083229)

Chromosome 10 - NC_051345.1Genomic Context describing neighboring genes Neighboring gene extracellular peptidase inhibitor-like Neighboring gene WAP four-disulfide core domain 21 Neighboring gene HNF1 homeobox B Neighboring gene DExD-box helicase 52

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
HEAT repeat-containing protein 6
Names
2700008B19Rik-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079897.1NP_001073366.1  HEAT repeat-containing protein 6

    See identical proteins and their annotated locations for NP_001073366.1

    Status: PROVISIONAL

    Source sequence(s)
    EF122003
    UniProtKB/Swiss-Prot
    A1EC95
    Related
    ENSRNOP00000003492.4, ENSRNOT00000003492.6
    Conserved Domains (2) summary
    pfam13251
    Location:490671
    DUF4042; Domain of unknown function (DUF4042)
    sd00044
    Location:885914
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051345.1 Reference mRatBN7.2 Primary Assembly

    Range
    68634855..68665445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039086617.1XP_038942545.1  HEAT repeat-containing protein 6 isoform X1

    Conserved Domains (2) summary
    sd00044
    Location:773798
    HEAT; HEAT repeat [structural motif]
    pfam13251
    Location:419600
    DUF4042; Domain of unknown function (DUF4042)

RNA

  1. XR_005489915.1 RNA Sequence

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