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N4bp2l1 NEDD4 binding protein 2-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498131, updated on 5-Mar-2024

Summary

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Official Symbol
N4bp2l1provided by RGD
Official Full Name
NEDD4 binding protein 2-like 1provided by RGD
Primary source
RGD:1595713
See related
AllianceGenome:RGD:1595713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human N4BP2L1 (NEDD4 binding protein 2 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 70.5), Spleen (RPKM 66.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See N4bp2l1 in Genome Data Viewer
Location:
12p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (4938199..4965003, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (102572..128352, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (546759..576744, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene zygote arrest 1-like Neighboring gene U4 spliceosomal RNA Neighboring gene BRCA2, DNA repair associated Neighboring gene NEDD4 binding protein 2-like 2 Neighboring gene PDS5 cohesin associated factor B Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
NEDD4-binding protein 2-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035222.2 → NP_001030299.1  NEDD4-binding protein 2-like 1

    See identical proteins and their annotated locations for NP_001030299.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168658
    UniProtKB/TrEMBL
    B5DEG3
    Conserved Domains (1) summary
    pfam13671
    Location:42 → 175
    AAA_33; AAA domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    4938199..4965003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089675.2 → XP_038945603.1  NEDD4-binding protein 2-like 1 isoform X1

    Conserved Domains (1) summary
    pfam13671
    Location:42 → 128
    AAA_33; AAA domain

RNA

  1. XR_005491660.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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