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Pcdhga12 protocadherin gamma subfamily A, 12 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498850, updated on 30-Sep-2021

Summary

Symbol
Pcdhga12provided by RGD
Full Name
protocadherin gamma subfamily A, 12provided by RGD
Primary source
RGD:1587258
See related
EnsemblRapid:ENSRNOG00000063070
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 166.8), Lung (RPKM 110.8) and 9 other tissues See more
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Genomic context

See Pcdhga12 in Genome Data Viewer
Location:
18p11
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29592664..29667865)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30913655..30971113)

Chromosome 18 - NC_051353.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma subfamily A, 1 Neighboring gene protocadherin gamma subfamily A, 2 Neighboring gene protocadherin gamma subfamily A, 3 Neighboring gene protocadherin gamma subfamily B, 1 Neighboring gene uncharacterized LOC103694196 Neighboring gene protocadherin gamma subfamily A, 4 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene protocadherin gamma subfamily A, 5 Neighboring gene protocadherin gamma subfamily A, 7 Neighboring gene protocadherin gamma subfamily A, 8 Neighboring gene protocadherin gamma subfamily A, 9 Neighboring gene protocadherin gamma subfamily A, 10 Neighboring gene protocadherin gamma subfamily B, 7 Neighboring gene protocadherin gamma subfamily A, 11 Neighboring gene protocadherin gamma subfamily B, 8 Neighboring gene protocadherin gamma subfamily C, 3 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene diaphanous-related formin 1 Neighboring gene uncharacterized LOC120098325 Neighboring gene histone deacetylase 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

General protein information

Preferred Names
protocadherin gamma-A12
Names
protocadherin gamma a12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037337.1NP_001032414.1  protocadherin gamma-A12

    See identical proteins and their annotated locations for NP_001032414.1

    Status: PROVISIONAL

    Source sequence(s)
    AY574011
    UniProtKB/TrEMBL
    I6LBW9
    Related
    ENSRNOP00000026947.7, ENSRNOT00000026947.7
    Conserved Domains (4) summary
    cd11304
    Location:246343
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30112
    Cadherin_2; Cadherin-like
    pfam15974
    Location:809905
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam16492
    Location:689772
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051353.1 Reference mRatBN7.2 Primary Assembly

    Range
    29592664..29667865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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